MANIFEST.in
requirements.txt
setup.py
bin/biobox
biobox_cli/__init__.py
biobox_cli/behave_interface.py
biobox_cli/biobox.py
biobox_cli/biobox_file.py
biobox_cli/container.py
biobox_cli/main.py
biobox_cli/version.py
biobox_cli.egg-info/PKG-INFO
biobox_cli.egg-info/SOURCES.txt
biobox_cli.egg-info/dependency_links.txt
biobox_cli.egg-info/requires.txt
biobox_cli.egg-info/top_level.txt
biobox_cli/assets/error_messages.yml
biobox_cli/assets/login_parameters.yml
biobox_cli/biobox_type/__init__.py
biobox_cli/biobox_type/assembler_benchmark.py
biobox_cli/biobox_type/short_read_assembler.py
biobox_cli/command/__init__.py
biobox_cli/command/login.py
biobox_cli/command/run.py
biobox_cli/command/verify.py
biobox_cli/util/__init__.py
biobox_cli/util/assets.py
biobox_cli/util/error.py
biobox_cli/util/functional.py
biobox_cli/util/misc.py
biobox_cli/verification/__init__.py
biobox_cli/verification/__init__.pyc
biobox_cli/verification/assembler_benchmark.feature
biobox_cli/verification/assembler_read_based_benchmark.feature
biobox_cli/verification/environment.py
biobox_cli/verification/short_read_assembler.feature
biobox_cli/verification/taxonomic_binning_benchmark.feature
biobox_cli/verification/data/assembly.fasta
biobox_cli/verification/data/genome_paired_reads.fq.gz
biobox_cli/verification/data/read_based_benchmark/assembly.fasta
biobox_cli/verification/data/references/reference.fasta
biobox_cli/verification/data/taxonomic_binning/contigs.fna
biobox_cli/verification/data/taxonomic_binning/labels.binning
biobox_cli/verification/data/taxonomic_binning/prediction.binning
biobox_cli/verification/data/taxonomic_binning/taxonomy/names.dmp
biobox_cli/verification/data/taxonomic_binning/taxonomy/nodes.dmp
biobox_cli/verification/steps/__init__.py
biobox_cli/verification/steps/__init__.pyc
biobox_cli/verification/steps/cli.py
biobox_cli/verification/steps/cli.pyc
doc/bioboxes-cli.mkd
test/test_behave_interface.py
test/test_biobox_file.py
test/test_container.py
test/test_login.py
test/test_util_error.py
test/test_util_functional.py
test/test_verify.py