numpy<2.0.0,>=1.0.0
pandas>=2.2.3
tqdm>=4.67.1
scipy>=1.15.2
biopython~=1.84
viennarna>=2.6.4
rdkit>=2024.9.5
torch>=2.3.1

[cuda]
torch==2.3.1+cu121

[test]
pytest>=7.3.2
pytest-cov>=5.0.0
pytest-mock>=3.14.0
