Metadata-Version: 2.1
Name: boink
Version: 0.0.0
Summary: boink: streaming de Bruijn graph compaction and sketching.
Home-page: UNKNOWN
Author: Camille Scott
Author-email: cswel@ucdavis.edu
License: UNKNOWN
Platform: any
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: C++
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering
Requires-Python: >=3.6
Requires-Dist: plotille
Requires-Dist: cppyy (>=1.5.5)
Requires-Dist: clang
Requires-Dist: py-cpuinfo
Requires-Dist: screed
Requires-Dist: blessings
Requires-Dist: pyfiglet
Requires-Dist: numpy


.. image:: https://travis-ci.org/camillescott/boink.svg?branch=master
    :target: https://travis-ci.org/camillescott/boink

boink
-----

Installation
============

For this repository with anaconda::

    git clone https://github.com/camillescott/boink && cd boink
    git submodule update --init --recursive

    conda create -y -n libboink -c conda-forge python=3 cmake cxx-compiler c-compiler clangdev libcxx libstdcxx-ng libgcc-ng pytest numpy scipy openmp python-clang screed blessings pytest-benchmark pyfiglet py-cpuinfo
    conda activate libboink
    pip install -r requirements.txt

    mkdir build; cd build
    cmake ..
    make
    make install



