scripts
*.py[cod]

# C extensions
*.so
cortex/formats.c
cortex/openctm.c

# Version file generated by setuptools-scm
cortex/_version.py

# Packages
*.egg
*.egg-info
dist
build
eggs
parts
bin
var
sdist
develop-eggs
.installed.cfg
lib
lib64

# Cached files in filestore
# NOTE: the filestore really should never be in the git repo... Needs work.
filestore/db/*/cache
filestore/db/*/surface-info
filestore

# Installer logs
pip-log.txt

# Unit test / coverage reports
.coverage
coverage.*
.tox
nosetests.xml

# Translations
*.mo

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

# OS X 
.DS_store

# vim temp files
*~

# vscode and other IDEs
.vscode
.idea

*.nfs*

# docs build
docs/_build
docs/auto_examples
docs/generated
docs/colormaps.rst
docs/sg_execution_times.rst

# Outputs the example gallery writes into the source tree when docs are built
examples/quickflat/flatmap_comparison.gif
examples/quickflat/my_flatmap.png
examples/quickflat/my_flatmap.svg
examples/quickstart/S1_retinotopy.hdf

# Python virtual environment
.venv

# Git worktrees
.worktrees

# Claude Code working directory (per-worktree scratch: launchers, verify
# scripts, plans). Not part of the project.
.claude
uv.lock
