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axon_projection/__init__.py
axon_projection/axonal_projections.py
axon_projection/check_atlas.py
axon_projection/choose_hierarchy_level.py
axon_projection/classify_axons.py
axon_projection/cli.py
axon_projection/compute_morphometrics.py
axon_projection/concat_dataframes.py
axon_projection/config_a_p.cfg
axon_projection/count_tufts.py
axon_projection/manipulate_tufts_json.py
axon_projection/neurite_check.py
axon_projection/plot_results.py
axon_projection/plot_utils.py
axon_projection/prod-forge-nexus.yml
axon_projection/query_atlas.py
axon_projection/remove_unifurcations.py
axon_projection/run.py
axon_projection/sample_axon.py
axon_projection/separate_tufts.py
axon_projection/test_morphometrics.py
axon_projection/test_test.py
axon_projection/utils.py
axon_projection/version.py
axon_projection/visualize_connections.py
axon_projection.egg-info/PKG-INFO
axon_projection.egg-info/SOURCES.txt
axon_projection.egg-info/dependency_links.txt
axon_projection.egg-info/entry_points.txt
axon_projection.egg-info/requires.txt
axon_projection.egg-info/top_level.txt
axon_projection/figures_scripts/README.md
axon_projection/figures_scripts/acronyms_to_names.py
axon_projection/figures_scripts/build_connectome.py
axon_projection/figures_scripts/compute_scores.py
axon_projection/figures_scripts/conn_vs_dist.py
axon_projection/figures_scripts/plot_feat_cmp.py
axon_projection/figures_scripts/total_lengths.py
axon_projection/figures_scripts/plot_flatmap_h5/background.png
axon_projection/figures_scripts/plot_flatmap_h5/flatmap_util.py
axon_projection/figures_scripts/plot_flatmap_h5/flatplot.py
axon_projection/figures_scripts/plot_flatmap_h5/parse_cmap.py
axon_projection/figures_scripts/plot_flatmap_h5/plot_multiple_morphs.py
axon_projection/out_a_p_final/count_morphs_iso.py
axon_projection/validation/compare_populations.py
axon_projection/validation/config_synth_favored_new_atlas.cfg
axon_projection/validation/create_rg_inputs.py
axon_projection/validation/circuit-build/add_axons.py
axon_projection/validation/circuit-build/axon_synth.sh
axon_projection/validation/circuit-build/change_morph_extension.py
axon_projection/validation/circuit-build/compare_dfs.py
axon_projection/validation/circuit-build/convert_single_morph.py
axon_projection/validation/circuit-build/create_parents.py
axon_projection/validation/circuit-build/merge_axons.py
axon_projection/validation/circuit-build/plot_target_pts.py
axon_projection/validation/circuit-build/post_proc_axon_synth.sh
axon_projection/validation/circuit-build/prepare_axon_synth.sh
axon_projection/validation/circuit-build/reset_morphs_wo_axons.py
axon_projection/validation/circuit-build/axon-synthesis/build_dependency_graph.py
axon_projection/validation/circuit-build/axon-synthesis/setup.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/atlas.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/base_path_builder.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/constants.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/typing.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/utils.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/version.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/white_matter_recipe.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/cli/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/cli/common.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/cli/input_creation.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/cli/scripts.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/cli/synthesis.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/cli/utils.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/cli/validation.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/create.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/pop_neuron_numbers.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/trunk_properties.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/clustering/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/clustering/extract_terminals.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/clustering/from_barcodes.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/clustering/from_brain_regions.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/clustering/from_sphere_parents.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/clustering/from_spheres.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/clustering/plot.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/inputs/clustering/utils.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/add_tufts.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/outputs.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/plot.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/source_points.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/target_points.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/tuft_properties.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/main_trunk/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/main_trunk/post_process.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/main_trunk/steiner_morphology.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/main_trunk/steiner_tree.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/main_trunk/create_graph/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/synthesis/main_trunk/create_graph/plot.py
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axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/validation/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/validation/atlas_utils.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/validation/mimic.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/validation/projection_intensity.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/validation/statistics.py
axon_projection/validation/circuit-build/axon-synthesis/axon_synthesis/validation/utils.py
axon_projection/validation/circuit-build/axon-synthesis/docs/source/conf.py
axon_projection/validation/circuit-build/axon-synthesis/docs/source/scripts/create_graph_figure.py
axon_projection/validation/circuit-build/axon-synthesis/tests/__init__.py
axon_projection/validation/circuit-build/axon-synthesis/tests/conftest.py
axon_projection/validation/circuit-build/axon-synthesis/tests/data_factories.py
axon_projection/validation/circuit-build/axon-synthesis/tests/test_atlas.py
axon_projection/validation/circuit-build/axon-synthesis/tests/test_cli.py
axon_projection/validation/circuit-build/axon-synthesis/tests/test_clustering.py
axon_projection/validation/circuit-build/axon-synthesis/tests/test_examples.py
axon_projection/validation/circuit-build/axon-synthesis/tests/test_trunk_post_process.py
axon_projection/validation/circuit-build/circuit-build-code/setup.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/__init__.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/cli.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/commands.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/constants.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/context.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/ngv.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/sonata_config.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/utils.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/validators.py
axon_projection/validation/circuit-build/circuit-build-code/build/lib/circuit_build/version.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/__init__.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/cli.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/commands.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/constants.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/context.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/ngv.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/sonata_config.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/utils.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/validators.py
axon_projection/validation/circuit-build/circuit-build-code/circuit_build/version.py
axon_projection/validation/circuit-build/circuit-build-code/doc/source/conf.py
axon_projection/validation/circuit-build/circuit-build-code/tests/assertions.py
axon_projection/validation/circuit-build/circuit-build-code/tests/conftest.py
axon_projection/validation/circuit-build/circuit-build-code/tests/utils.py
axon_projection/validation/circuit-build/circuit-build-code/tests/functional/test_run.py
axon_projection/validation/circuit-build/circuit-build-code/tests/functional/test_run_synthesis.py
axon_projection/validation/circuit-build/circuit-build-code/tests/functional/ngv-full/test_ngv_full.py
axon_projection/validation/circuit-build/circuit-build-code/tests/functional/ngv-standalone/test_ngv_standalone.py
axon_projection/validation/circuit-build/circuit-build-code/tests/unit/test_circuit_paths.py
axon_projection/validation/circuit-build/circuit-build-code/tests/unit/test_cli.py
axon_projection/validation/circuit-build/circuit-build-code/tests/unit/test_commands.py
axon_projection/validation/circuit-build/circuit-build-code/tests/unit/test_context.py
axon_projection/validation/circuit-build/circuit-build-code/tests/unit/test_ngv.py
axon_projection/validation/circuit-build/circuit-build-code/tests/unit/test_release.py
axon_projection/validation/circuit-build/circuit-build-code/tests/unit/test_sonata_config.py
axon_projection/validation/circuit-build/circuit-build-code/tests/unit/test_validators.py
axon_projection/validation/circuit-build/circuit-build-code/tools/check_atlas.py
axon_projection/validation/circuit-build/lite_iso_final/replace_circuit_path.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ACA/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ACA/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ACA/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ACA/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_AI/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_AI/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_AI/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_AI/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_AUD/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_AUD/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_AUD/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_AUD/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ECT/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ECT/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ECT/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ECT/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_FRP/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_FRP/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_FRP/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_FRP/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_GU/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_GU/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_GU/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_GU/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_ILA/agent.py
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axon_projection/validation/circuit-build/lite_iso_final/movie_MOp/agent.py
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axon_projection/validation/circuit-build/lite_iso_final/movie_ORB/scalebar.py
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axon_projection/validation/circuit-build/lite_iso_final/movie_PL/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_PTLp/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_PTLp/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_PTLp/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_PTLp/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_RSP/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_RSP/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_RSP/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_RSP/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_SSp/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_SSp/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_SSp/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_SSp/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_SSs/agent.py
axon_projection/validation/circuit-build/lite_iso_final/movie_SSs/make-movie.py
axon_projection/validation/circuit-build/lite_iso_final/movie_SSs/painter.py
axon_projection/validation/circuit-build/lite_iso_final/movie_SSs/scalebar.py
axon_projection/validation/circuit-build/lite_iso_final/movie_TEa/agent.py
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axon_projection/validation/circuit-build/lite_iso_final/movie_TEa/scalebar.py
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