biopipen/__init__.py,sha256=OlatFEFA4ttqSSIiV8jdE-sq3KG5zu2hnC4B4mzWF3s,23
biopipen/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
biopipen/core/config.py,sha256=edK5xnDhM8j27srDzsxubi934NMrglLoKrdcC8qsEPk,1069
biopipen/core/config.toml,sha256=7IXvviRicZ2D1h6x3BVgbLJ96nsh-ikvZ0sVlQepqFE,1944
biopipen/core/defaults.py,sha256=yPeehPLk_OYCf71IgRVCWuQRxLAMixDF81Ium0HtPKI,344
biopipen/core/filters.py,sha256=5bZsbpdW7DCxqiteRdb2gelmXvfqWPmPsFxrpHdWsoE,12987
biopipen/core/proc.py,sha256=60lUP3PcUAaKbDETo9N5PEIoeOYrLgcSmuytmrhcx8g,912
biopipen/core/testing.py,sha256=lZ_R5ZbYPO2NPuLHdbzg6HbD_f4j8paVVbyeUqwg6FE,3411
biopipen/ns/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
biopipen/ns/bam.py,sha256=jLhIztPiKsGfMpDgbcEpsybFskKkquIx9OKyTOc_L7Q,9172
biopipen/ns/bed.py,sha256=HsTCJge7XNfCZyCBJ4iifNKQ5we4VZSpRx8XL8--y5A,6689
biopipen/ns/cellranger.py,sha256=yPBoNzVSY74J7uyVucaob5lqZKKru5-hYSM4f4Nr2OY,5553
biopipen/ns/cellranger_pipeline.py,sha256=EWkPJTujamNSMQoRnKfhUiIj6TkMfRmCSUbPfd8Tv8E,4011
biopipen/ns/cnv.py,sha256=ssQAHf2MB675avoXVRkYy0vGiqIpRpRExywjhbymmBI,7811
biopipen/ns/cnvkit.py,sha256=5mA2Q8-YDs4g1HoxtpB_NWnyZYwEThNr3s3wlubLQrQ,31130
biopipen/ns/cnvkit_pipeline.py,sha256=DZZljwvwVEI9sRUYBdxkOIT5-CIPLH1tag_OIU86aes,37094
biopipen/ns/delim.py,sha256=fejsh4KW1TG5oMZzAC238LvQhBz7brXkfl3BHfnLK5M,5612
biopipen/ns/gene.py,sha256=rty-Bjcf87v2vyb9X4kRvfrQ6XQYXgN4f2ftFO0nWA8,3888
biopipen/ns/gsea.py,sha256=EsNRAPYsagaV2KYgr4Jv0KCnZGqayM209v4yOGGTIOI,7423
biopipen/ns/misc.py,sha256=qXcm0RdR6W-xpYGgQn3v7JBeYRWwVm5gtgSj2tdVxx4,2935
biopipen/ns/plot.py,sha256=_dGLKpyHiJqLIIQu5tqCk8H5BkgGBh_qRUZHkjnOgtE,18080
biopipen/ns/regulatory.py,sha256=qvc9QrwgwCI_lg0DQ2QOZbAhC8BAD1qnQXSGtAGlVcY,11750
biopipen/ns/rnaseq.py,sha256=bKAa6friFWof4yDTWZQahm1MS-lrdetO1GqDKdfxXYc,7708
biopipen/ns/scrna.py,sha256=UNX1v_nMM3tzxbj6ecyZuI1aW9vyy4P2Xv3yia7fQ2w,110412
biopipen/ns/scrna_metabolic_landscape.py,sha256=6AhaynGG3lNRi96N2tReVT46BJMuEwooSSd2irBoN80,28347
biopipen/ns/snp.py,sha256=-Jx5Hsv_7KV7TqLU0nHCaPkMEN0CFdi4tNVlyq0rUZ4,27259
biopipen/ns/stats.py,sha256=DlPyK5Vsg6ZEkV9SDS3aAw21eXzvOHgqeZDkXPhg7go,20509
biopipen/ns/tcgamaf.py,sha256=AFbUJIxiMSvsVY3RcHgjRFuMnNh2DG3Mr5slLNEyz6o,1455
biopipen/ns/tcr.py,sha256=0PCF8iPZ629z6P3RHoAWEpMWmuDslomTGcMopjqvXmE,88304
biopipen/ns/vcf.py,sha256=0aKH_YSLy_-JzV-_VZb0EoScv7JKGrDU7BaeWHjDuRo,22699
biopipen/ns/web.py,sha256=4itJzaju8VBARIyZjDeh5rsVKpafFq_whixnvL8sXes,5368
biopipen/reports/bam/CNAClinic.svelte,sha256=D4IxQcgDCPQZMbXog-aZP5iJEQTK2N4i0C60e_iXyfs,213
biopipen/reports/bam/CNVpytor.svelte,sha256=s03SlhbEPd8-_44Dy_cqE8FSErhUdqStLK39te5o7ZE,1364
biopipen/reports/bam/ControlFREEC.svelte,sha256=OwN96RW0dN-gtQ1zWKbXYZCYkkrOC0RQmP3UG4x7zqU,837
biopipen/reports/cellranger/CellRangerCount.svelte,sha256=InkkGold9Vta8vSPeE7WgFuFWuMVBkQvwc2yxWFGVM4,466
biopipen/reports/cellranger/CellRangerSummary.svelte,sha256=WEYPwmcmgtSqpFpTvNPV40yZR-7ERa5LgZni2RXxUZQ,348
biopipen/reports/cellranger/CellRangerVdj.svelte,sha256=InkkGold9Vta8vSPeE7WgFuFWuMVBkQvwc2yxWFGVM4,466
biopipen/reports/cnv/AneuploidyScore.svelte,sha256=x0LbhqjauZpqMzmzDWmYgx-rEh5Tzo8qBrXcLcM0h78,1020
biopipen/reports/cnv/AneuploidyScoreSummary.svelte,sha256=AWlns70mChJGhH3z8r5uXuI4tc7VbVN_cOUdqBr3ZKg,4414
biopipen/reports/cnv/TMADScoreSummary.svelte,sha256=tJutaMOqeXxKroAosOIqOJVyhTTFet-soMwuOYVHTYU,2060
biopipen/reports/cnvkit/CNVkitDiagram.svelte,sha256=8QLihBVH8RaHtjOUTU7xh4CCmFyxO1Bb9oOvLkOHeVo,467
biopipen/reports/cnvkit/CNVkitHeatmap.svelte,sha256=IhwSvEdx3h-LZuwKN3vgiUIW8MD7a280YXqL_xNvIOA,519
biopipen/reports/cnvkit/CNVkitScatter.svelte,sha256=8QLihBVH8RaHtjOUTU7xh4CCmFyxO1Bb9oOvLkOHeVo,467
biopipen/reports/delim/SampleInfo.svelte,sha256=Vpjrdd3AXNDNhx2pzDaFA61xPMYAFKvvIoVCqUswiyo,365
biopipen/reports/gsea/FGSEA.svelte,sha256=3gNbZovmRWK6QjtxfgZgmft6LUurVZfQyHBRqyGMosk,405
biopipen/reports/gsea/GSEA.svelte,sha256=lYHf8h8RLx3i-jNCEGu_LM-dbYm9ZJDzyAEadsZXzmQ,417
biopipen/reports/scrna/CellsDistribution.svelte,sha256=Mg6P0tazpzOxsOAtc-0LGEim5KprPt5KIgoW3TzrxxA,413
biopipen/reports/scrna/DimPlots.svelte,sha256=ZLbtN0ioevRyEky4jb_DkDGAcpy_jAhaHfFym5ELEPM,479
biopipen/reports/scrna/MarkersFinder.svelte,sha256=77rD1psj0VJykPDhfwS-B8mubvaasREAE6RYR2atTN4,444
biopipen/reports/scrna/MetaMarkers.svelte,sha256=iIFRKjvVYrM1AtDWqq8UfeS8q23R8FKg2yepKAw2KSE,508
biopipen/reports/scrna/RadarPlots.svelte,sha256=g_fp9d3vdnzk-egXPhkhhfWXOeG569Rj8rYLRIKmlLc,396
biopipen/reports/scrna/ScFGSEA.svelte,sha256=Gqt-XjqsB3XgdR3XukvphwyMExZpScwqgEo7AD-gK6g,491
biopipen/reports/scrna/SeuratClusterStats.svelte,sha256=rTsoOCiVm7lEyBYgu2ZVcKNGi4g6PynYoOSx0DHdTHo,429
biopipen/reports/scrna/SeuratMap2Ref.svelte,sha256=SYuoKJR1PuBf9c7WvUXXjmokVo-JxFLqZqiu9kTtLuY,542
biopipen/reports/scrna/SeuratPreparing.svelte,sha256=CCQ3qodjfoQeMZhSZp7irvSqBt10m7urzcWEOHsZa8M,365
biopipen/reports/scrna/TopExpressingGenes.svelte,sha256=h2Or2cKCzuY2cypq1PKrqiHFVMZmFUgFOXoQumvfGSk,471
biopipen/reports/scrna_metabolic_landscape/MetabolicFeatures.svelte,sha256=4M8V6jDv1_ZviTsRdoYNQixoTnKiD06oPHzVabUTq6k,978
biopipen/reports/scrna_metabolic_landscape/MetabolicFeaturesIntraSubset.svelte,sha256=7FohWYR2BEqo77W4FuGsuwEEvG7j_Mc2ohXG8TSgODg,907
biopipen/reports/scrna_metabolic_landscape/MetabolicPathwayActivity.svelte,sha256=bbPWDEXTi-A377Vo2VaEyh_VoxGmFj-P3WX8g_y_-9k,3416
biopipen/reports/scrna_metabolic_landscape/MetabolicPathwayHeterogeneity.svelte,sha256=TohFc1IsHFAio8WNu_1FoaJucxsW3OtmS7fIJOH5KHc,350
biopipen/reports/snp/PlinkCallRate.svelte,sha256=QoHqzJ88sx8d8FfH4ToFcR690RX0jmi2SaeWVAnw8y0,730
biopipen/reports/snp/PlinkFreq.svelte,sha256=gHN1SezJ5l732Ndtrl_xZABdWPoSvAWkRh1rKbcsD1c,535
biopipen/reports/snp/PlinkHWE.svelte,sha256=nes-NTwatoxvLoRBCg6jPp0fSg5kZZkVngURpfmM_nc,502
biopipen/reports/snp/PlinkHet.svelte,sha256=hlSGx3qVETvZg6cd6vf27EtGeRzwD86I01kMLyIHEC4,545
biopipen/reports/snp/PlinkIBD.svelte,sha256=s7nepF52Q4hKhRnIZDTFXqG7SIvhGy0NtfnTpexG0mE,507
biopipen/reports/tcr/CDR3AAPhyschem.svelte,sha256=_r1pi_yTu_KjC02aegZ52IEQY8Mq0p3nqW_o9wOFWf8,1530
biopipen/reports/tcr/CloneResidency.svelte,sha256=pzjkdGAhB7STxlXkTY5wnTT3plhkAPKMdGa6jwKuwoc,470
biopipen/reports/tcr/Immunarch.svelte,sha256=jHOGUCWREaDNUf1_s6h9Kx_sp-y_dDRqY1rWrx0o0LM,433
biopipen/reports/tcr/SampleDiversity.svelte,sha256=GrPUpQ6aJPtyQHoFL9ayG6knpW6yZznqwo0ZVZ2tMl4,5524
biopipen/reports/tcr/TCRClusterStats.svelte,sha256=YGK5_Vp85QmUJZO1ZGtg1IWBsh9o-z-dSYC8kuW3ssU,415
biopipen/reports/tcr/TESSA.svelte,sha256=S1tG0HIU5569ybV0shuTz1CN0JcqFrFNB7M6JCiGhm0,1948
biopipen/reports/tcr/VJUsage.svelte,sha256=c9G2-APGG0l-c6b32aFOimrP_QYD-oELBASN4VabXmk,426
biopipen/reports/utils/gsea.liq,sha256=5uxNPyIr0xd7nrZePJlIsRyqCPx1uVWso7ehE1F-C4k,3556
biopipen/reports/utils/misc.liq,sha256=HLK3mkWtIMQqBtM2IIRFUdKKTcY8cvBtyHJB9DbWBdw,1653
biopipen/reports/vcf/TruvariBenchSummary.svelte,sha256=yew8HRN-YahBzX504Micah5BTnoL_PQzQfN_87TiuOA,577
biopipen/reports/vcf/TruvariConsistency.svelte,sha256=BBvtxi1EPmGH7j5M5zMOcLEhKWZOlKoXp1lrQGAmz_0,647
biopipen/scripts/bam/BamMerge.py,sha256=jyaJI0-TulAxaCzvrYjC8PujH_ECNInevnPbh2_XQtU,3477
biopipen/scripts/bam/BamSplitChroms.py,sha256=b7GS2I4X0dLOhlPg_r9-buoIHTWlq6zHI3Rox94LXR8,4893
biopipen/scripts/bam/CNAClinic.R,sha256=mQXwtShL54HZXGCPqgPKPrU74_6K_8PqtOtG0mgA-F0,5062
biopipen/scripts/bam/CNVpytor.py,sha256=hOUli9BDMOoth0or-tjUYC1AP3yNOuxUS6G3Rhcg99s,18000
biopipen/scripts/bam/ControlFREEC.py,sha256=oX6iWsos-CfiT_ViDBrKeMOOIVdCKWrB-_MqzLgEF9s,3267
biopipen/scripts/bed/Bed2Vcf.py,sha256=u0mp_2Y4UtEA839zq9UENesH6Gyiwd4sZQW9wFnBVU0,5090
biopipen/scripts/bed/BedConsensus.py,sha256=gfAxuIalvCEpS0tiOyAJGPYGgHN0L-hm0K37Iteh5yw,2386
biopipen/scripts/bed/BedLiftOver.sh,sha256=Y4gBsz9w4zhE29UmWojO6F4PXMMMWC1uCzjrxa19eOs,256
biopipen/scripts/bed/BedtoolsIntersect.py,sha256=sFyXPL3kG59xa5eJwHumcQLw3lfabOXsq2-k8IgIqt4,1722
biopipen/scripts/bed/BedtoolsMerge.py,sha256=7mt307V_wWa_ME0VfuMsVX0HgEwfDcZtY_bDvOPjFiQ,368
biopipen/scripts/cellranger/CellRangerCount.py,sha256=b9kkHPpq-bFh-3XCUdxdMKg3SsZmEzZFrG3dbtb4fX8,2875
biopipen/scripts/cellranger/CellRangerSummary.R,sha256=mVOCIHngEpJIKVD3tMG5UWqS0OQGGjY6yx6ikRcqQU4,11067
biopipen/scripts/cellranger/CellRangerVdj.py,sha256=ipGkPzkiVy5IpPrYKUK4zgEIvz-aMJOKbMEN-bMStFE,2200
biopipen/scripts/cnv/AneuploidyScore.R,sha256=Bpm1cU7VkoinoKKzMuzqFntS8hjdd2IpBUjDiZyM7l4,9163
biopipen/scripts/cnv/AneuploidyScoreSummary.R,sha256=dSnekzXetM8BDmZPhHOS8WwEeOfszPfqthq6TrZ3aPc,12452
biopipen/scripts/cnv/TMADScore.R,sha256=IH07REfBO3QB2QNWuwGY6LgAUAOE0lsfP6W0bS67zGs,1530
biopipen/scripts/cnv/TMADScoreSummary.R,sha256=w58LD5xHnLal9jv53nBUGpQ8eTkAyEk1leCVN2T_ZaM,7109
biopipen/scripts/cnvkit/CNVkitAccess.py,sha256=UerX66utY8UdlI1mlSVD7E9O0ByLnHzt6G3Urb8mCWE,689
biopipen/scripts/cnvkit/CNVkitAutobin.py,sha256=H5YcQ8f7Vs01Wad_oEQ9_AKBo5bKW856hAxShD75oDA,1656
biopipen/scripts/cnvkit/CNVkitBatch.py,sha256=uzb300XLPRzV1BOOug6dAmupZ5FtQamFoYslVmbdTCA,3794
biopipen/scripts/cnvkit/CNVkitCall.py,sha256=NyOnMjwT4w-ID9YtNks6fp6BIG7OzkGHmYphcXzAy_M,3544
biopipen/scripts/cnvkit/CNVkitCoverage.py,sha256=hTXh77QmMWy12Ipphdabkai19D0ZfKd7XF5Soc-HSG8,823
biopipen/scripts/cnvkit/CNVkitDiagram.py,sha256=tvHW6wAZ9YXKb6sbdvWEO_HPjLK4LOYxrcnPkV8iUoA,1889
biopipen/scripts/cnvkit/CNVkitFix.py,sha256=nZ7_15ba4zgTRpyQfyGAdcx1kCWyNTyjfEkKYxQumJA,1087
biopipen/scripts/cnvkit/CNVkitGuessBaits.py,sha256=lrNNa3-jH87WCmdVv8lRmS894xT_zNjFjWXmi1oSG4U,2216
biopipen/scripts/cnvkit/CNVkitHeatmap.py,sha256=gtLSI2ipnB9amEM_hJtl73iM-0jGG_fvn1uPMIlFa-o,2485
biopipen/scripts/cnvkit/CNVkitReference.py,sha256=dO5vzqlgfecYUNJ3I2TvBdL_zKEJyKl3mRcL14GLDGU,1402
biopipen/scripts/cnvkit/CNVkitScatter.py,sha256=7DhTiXPHEHbdXn0VFcDOR-wTP6sks08N94KG7zjo_Is,2728
biopipen/scripts/cnvkit/CNVkitSegment.py,sha256=q5iGAjY6-yIehPcJpi3hX6EuGre0YgWTPkG_d5LEV48,1629
biopipen/scripts/cnvkit/guess_baits.py,sha256=7OCMtSMHIJWWZv9qEYVXnB0N4hU_JaGEesKdkr6tvJc,10586
biopipen/scripts/delim/RowsBinder.R,sha256=1QtRiPdUoxR8st1nxBMyVXgpcLfeF-iGsMYHz-66L2s,1465
biopipen/scripts/delim/SampleInfo.R,sha256=xnpOGHGOMZeD_Ay7PBN9GkqW34sVkTufMIhbxKTw3wU,6727
biopipen/scripts/gene/GeneNameConversion.R,sha256=Jy2ykhCj9ClSdQUfdYavh2LaBm0nOIXY2kJKmpsqOlI,1818
biopipen/scripts/gene/GenePromoters.R,sha256=0ukq3-wpN6uq_cyJlQvKDVvy0Dv8cI5Htd9t2xpkEyk,2021
biopipen/scripts/gsea/Enrichr.R,sha256=gqN93oE3OeqW_TXZiE_gNH89_o_XFwnOWcHxhTUMvNs,724
biopipen/scripts/gsea/FGSEA.R,sha256=KpZWM-oskitRaMBDoXQoxa3zcSjZnN-fosKrzEgX28c,1525
biopipen/scripts/gsea/GSEA.R,sha256=Qo-QUY4B539Hm2FbsS2lsfgAxP_2FrhtPUN1Feq1Jmc,1125
biopipen/scripts/gsea/PreRank.R,sha256=qrqaf_0ghgpaS3d9XbNVCZS7ZEbZaEoxNzTQ2zkVB_Y,1398
biopipen/scripts/misc/Config2File.py,sha256=NUio0uOEuZtUBpuByDSItYu9Kwu5mosb4pdPq5-QAmE,440
biopipen/scripts/misc/Shell.sh,sha256=Rg8_DOfDFeUjZ_1_EVm2lbzyMLqcEv9A3k6SsTcfZZ0,493
biopipen/scripts/misc/Str2File.py,sha256=99oQNxChxChNJ9vmD77b48cu-r_P_heSpx7A5wi3qTE,212
biopipen/scripts/plot/Heatmap.R,sha256=xD_X-0J3kVdKPctTUGeBFXxNgd6N6XbBfBb3giFePJU,2045
biopipen/scripts/plot/Manhattan.R,sha256=7lJwCX1d0zUpJVhVcmQ35ZtQELzkaDNnBTNHHc3cxW0,4754
biopipen/scripts/plot/QQPlot.R,sha256=Xil19FJ7jbsxo1yU7dBhhZo2_95Gz6gpTyuv9F0RDNM,4115
biopipen/scripts/plot/ROC.R,sha256=cjmmYRQycYisqRmlkZE9nbmwfo-04wdJKVmlOsiEFAM,2451
biopipen/scripts/plot/Scatter.R,sha256=fg4H5rgdr6IePTMAIysiElnZme0vCh1T0wrwH2Q9xkM,2840
biopipen/scripts/plot/VennDiagram.R,sha256=IQG4OLXdORbmKMWca7dtSDX_RdH8FCrpDfi3eMae7G8,773
biopipen/scripts/regulatory/MotifAffinityTest.R,sha256=1sR3sWRZbxDeFO290LcpzZglzOLc13SSvibDON96PCg,8852
biopipen/scripts/regulatory/MotifAffinityTest_AtSNP.R,sha256=SAyTm2-6g5qVJFRrLxEY0QJrLWTkwDi_J_9J7HhtTN8,4438
biopipen/scripts/regulatory/MotifAffinityTest_MotifBreakR.R,sha256=wCK4tLx1iWh_OwW7ZvLTCjTGWCIfVqw-lYC0-JqIPqg,3338
biopipen/scripts/regulatory/MotifScan.py,sha256=WtSbs8z08oeTgzjr0LfIDmjbUdknAh1raa_QPQ_NCFg,5336
biopipen/scripts/regulatory/atSNP.R,sha256=TXJARbE0rDIzSq6Spacz_HsM_DXdREJ95ZsBg26trgw,1288
biopipen/scripts/regulatory/motifBreakR.R,sha256=trzvvTvwc5gSO427wkqx93FecuQxLGa9kNqodKa8S0U,70236
biopipen/scripts/rnaseq/Simulation-ESCO.R,sha256=68cEHDdJclX8P8Q7ey9yBOfK09M_kxlL6zgYXsEL2Rs,6378
biopipen/scripts/rnaseq/Simulation-RUVcorr.R,sha256=6C6Ke5RLF0fC2V9WQPoFEdqoDabCnhslZBIyB6zhIxc,1155
biopipen/scripts/rnaseq/Simulation.R,sha256=PK9tZS88AcBPStcFalZlMU0KE0gSqFSQvhUoQ-8eg90,871
biopipen/scripts/rnaseq/UnitConversion.R,sha256=pr1uZuzjapZKwIupE-xtE2HW-OwdVCGBVaHQ_3ipIDw,11377
biopipen/scripts/scrna/AnnData2Seurat.R,sha256=8VEXHnknoEPWRQ0cj80so6O5FAd1_YlwQ0CP0TwmZVo,2555
biopipen/scripts/scrna/CellTypeAnnotation-celltypist.R,sha256=2lkIwtSw2A21RCUBdo3BVUdAwsLTIq65NDA-ZR1YWE0,9644
biopipen/scripts/scrna/CellTypeAnnotation-common.R,sha256=s2exGdJ3WM8mDDeBXGUxuKO1DAGVgRiirHaJD0lPgDw,336
biopipen/scripts/scrna/CellTypeAnnotation-direct.R,sha256=hmuk3G4IbF66Sv4RmrcrKn8b4J7ZEBD5PzJHa5EKYB8,2125
biopipen/scripts/scrna/CellTypeAnnotation-hitype.R,sha256=zol-IF0jd3DTzw9I1UVUMYrRNHjeeRGFS_dk4VOi3ec,2015
biopipen/scripts/scrna/CellTypeAnnotation-sccatch.R,sha256=LTvFzGzP0nmQLkJIxn6H7L8xkP2Z3q52DknXtBkkmcA,1822
biopipen/scripts/scrna/CellTypeAnnotation-sctype.R,sha256=RhFHy1E4b3Y7pw6feKEhPx5GTbNdaQMDXHzvRlPk34Q,4544
biopipen/scripts/scrna/CellTypeAnnotation.R,sha256=X_LR0LZ6UQjLA-SCCcQ8CBFZGG_J8CUNx--qwBS8Oh8,773
biopipen/scripts/scrna/CellsDistribution.R,sha256=KOmo8rZBl2-xojyO1TaxE7JXLwIwArq-WdIR_JZxvcE,18958
biopipen/scripts/scrna/DimPlots.R,sha256=oKhygoWQOCck8OlpnOrNJg0CS2q-r8Com1dfjTvQzvU,1575
biopipen/scripts/scrna/ExprImputation-alra.R,sha256=xNdQiXgY13-iF16o2KgCJWfPIy4P-lOiO1bl9PfXI4U,864
biopipen/scripts/scrna/ExprImputation-rmagic.R,sha256=jYIfqZpnvjKJkvItLnemPVtUApHBYQi1_L8rHVbEe1M,735
biopipen/scripts/scrna/ExprImputation-scimpute.R,sha256=mg40qCUW7-nP5oHPvARq7dmtoahM0GRFWXQpum0BXVk,1082
biopipen/scripts/scrna/ExprImputation.R,sha256=GcdZJpkDpq88hRQjtLZY5-byp8V43stEFm5T-pQbU6A,319
biopipen/scripts/scrna/MarkersFinder.R,sha256=-PyxWYRX1t9VTJYJV7GpPmEIjq65Y8HHFCxy_jwId9g,23021
biopipen/scripts/scrna/MetaMarkers.R,sha256=opw5RyHpNnYXXnw0HQvFSaptw3IDaTiArwT1EOj_zFg,12114
biopipen/scripts/scrna/ModuleScoreCalculator.R,sha256=QJ_E6qjRC8GazoopcxZfT5cKxlubf4dK-V7KLBB-yRE,4210
biopipen/scripts/scrna/RadarPlots.R,sha256=4zs0hAm7yq1Ls62f_29koPLqAKCeKbYiztNM-HR7j3U,13041
biopipen/scripts/scrna/SCImpute.R,sha256=dSJOHhmJ3x_72LBRXT72dbCti5oiB85CJ-OjWtqONbk,2958
biopipen/scripts/scrna/ScFGSEA.R,sha256=MFoJ3i3LFBfsPCxwLPnTh141ZJyrzwnrTuCZIFwvYjU,6318
biopipen/scripts/scrna/Seurat2AnnData.R,sha256=G7bcHGffdNlz6Uuy98tQdlahXiPkTDokflp1yTUgcSQ,1578
biopipen/scripts/scrna/SeuratClusterStats-clustree.R,sha256=FkbniQMHiZGrFAIuS8nUfPVJKFofSL-ZnpxTqIhTa54,3058
biopipen/scripts/scrna/SeuratClusterStats-dimplots.R,sha256=NEdlJHNXnJZfF7YkefYVWTPO8Z_KAppRAs9rNvB8TXs,2360
biopipen/scripts/scrna/SeuratClusterStats-features.R,sha256=DeGo7AkBRq0V3Y3JDaifId6rrr5dwawTzcSAJ3W1lxE,15614
biopipen/scripts/scrna/SeuratClusterStats-hists.R,sha256=PXyDKww8HcloCU8r4IqRwRrm6Ly0cpmpvRcP30xxBa4,5038
biopipen/scripts/scrna/SeuratClusterStats-ngenes.R,sha256=ihZLB27iEhgICKj-ZTnxTvRAYIgg9rzWr9Oyh1YmOYM,2160
biopipen/scripts/scrna/SeuratClusterStats-stats.R,sha256=j4ZrmzwBYKIR0WGQaYxXOxangTZPxKwzmb1KDgP_jY4,9277
biopipen/scripts/scrna/SeuratClusterStats.R,sha256=fywRBVjaFIJBxdgsZxLXEheUZI4l5VUoNIcJnhPIdPQ,2193
biopipen/scripts/scrna/SeuratClustering-common.R,sha256=JX4Cn2FC6GOcBqaVyGDD3MM5zGpm3TpKJlfo2oOQ4Uk,8195
biopipen/scripts/scrna/SeuratClustering.R,sha256=0OKRBQ5rFuupK7c03_sSt2HMwMdMnCYFqTvkRXFKchs,1706
biopipen/scripts/scrna/SeuratFilter.R,sha256=BrYK0MLdaTtQvInMaQsmOt7oH_hlks0M1zykkJtg2lM,509
biopipen/scripts/scrna/SeuratLoading.R,sha256=ekWKnHIqtQb3kHVQiVymAHXXqiUxs6KKefjZKjaykmk,900
biopipen/scripts/scrna/SeuratMap2Ref.R,sha256=s4LlwVGIXgxivOOMEMoOPDKVxShrJX1q8AIICiFu7zo,10994
biopipen/scripts/scrna/SeuratMetadataMutater.R,sha256=PMwG0Xvl_EEVKkicfrIi4arEqpY948PkYLkb59kTAXI,1135
biopipen/scripts/scrna/SeuratPreparing-common.R,sha256=WuD7lGS17eAUQWSiIdAoV0EIeqS3Tnkkx-7PbP6Q3tc,16279
biopipen/scripts/scrna/SeuratPreparing-doublet_detection.R,sha256=TNN2lfFjpnnO0rguMsG38JYCP1nFUhcPLJ1LqGj-Sc8,6674
biopipen/scripts/scrna/SeuratPreparing.R,sha256=CZL6h3mLS5C34ooMa4GcwvSPn4l46Lx7-sRi9FmWvJI,3827
biopipen/scripts/scrna/SeuratSplit.R,sha256=vdK11V39_Uo_NaOh76QWCtxObGaEr5Ynxqq0hTiSvsU,754
biopipen/scripts/scrna/SeuratSubClustering.R,sha256=3MymNPsGUSi2hKlzSxTwhFogOfvqDAagcDR_tMAyt0Y,7593
biopipen/scripts/scrna/SeuratSubset.R,sha256=yVA11NVE2FSSw-DhxQcJRapns0tNNHdyDYi5epO6SKM,1776
biopipen/scripts/scrna/SeuratTo10X.R,sha256=1mh1R0Qlo1iHVrpMLUXyLDOA92QKJ4GzTMURTFRqsWg,901
biopipen/scripts/scrna/Subset10X.R,sha256=T2nJBTwOe12AIKC2FZsMSv6xx3s-67CYZokpz5wshqY,2679
biopipen/scripts/scrna/TopExpressingGenes.R,sha256=gYoPjHlhypCmqbED8hYdrt4DKAGkHgSs_TqVzyvVUIQ,7496
biopipen/scripts/scrna/celltypist-wrapper.py,sha256=f5M8f4rU5nC7l17RS0YVmUPpLLz4D6PIcgWtA77UExM,1722
biopipen/scripts/scrna/sctype.R,sha256=NaUJkABwF5G1UVm1CCtcMbwLSj94Mo24mbYCKFqo1Bw,6524
biopipen/scripts/scrna_metabolic_landscape/MetabolicFeatures.R,sha256=FN-nIRquw1pgQRviVx3us8ZdigugEjpjq22zIGSCoO4,5264
biopipen/scripts/scrna_metabolic_landscape/MetabolicFeaturesIntraSubset.R,sha256=Qt2lc-z91A12rxtGtcpM3gKaxXR1xb8innSiCVV_Il0,5544
biopipen/scripts/scrna_metabolic_landscape/MetabolicPathwayActivity.R,sha256=HwCjNupjF8pudBRjpOVZyfCxVCIprHYW2KNiMNbuP_w,16279
biopipen/scripts/scrna_metabolic_landscape/MetabolicPathwayHeterogeneity.R,sha256=92Q-KCD8fvxpovrSDr6FUFlS5acsdad8RdmIWvqZZ3s,9894
biopipen/scripts/snp/MatrixEQTL.R,sha256=nLM3E7Y3XTATcWV0e4c1GSoJc4xFKV49WeNLBTHjf9c,7223
biopipen/scripts/snp/Plink2GTMat.py,sha256=ypxuT6YEBuuSk9TML9SHhVtA38GlZvB-3tQakJd8YLQ,5052
biopipen/scripts/snp/PlinkCallRate.R,sha256=ATieZsVIhBfs1cOgLnJ-Qwl2f2F9wfaVYQOjsozoRFk,6202
biopipen/scripts/snp/PlinkFilter.py,sha256=eqC18ne3rPUzIJ_KjqvwQ79MyeMxe0oh4S9PnhfhK1E,3200
biopipen/scripts/snp/PlinkFreq.R,sha256=4HJRlu4j_hrdY6taXyCSt0ODrX47T2HjLFf4ZSnD2dU,10647
biopipen/scripts/snp/PlinkFromVcf.py,sha256=TZaJ117Qp-gbqPX7WK6r7Zw8XHVXbRO6wb0V1NQouxw,2284
biopipen/scripts/snp/PlinkHWE.R,sha256=QpGVDEkNNPvdJOWsB_ouBagNLv3W-ZQ34ur62bb-H1o,2243
biopipen/scripts/snp/PlinkHet.R,sha256=eqDrRYX2NhsqBcm2Wp0kGKUtTNLtBHXVcLeJMP3QCns,3047
biopipen/scripts/snp/PlinkIBD.R,sha256=hWW9emQmsS7jxA-J7-WZeAWrJPGl98YneNx-VU4qAuE,5754
biopipen/scripts/snp/PlinkSimulation.py,sha256=mSSoGGG6sbEPBcUGdHgbebUrg4DiHeyNyc7jLPjV5pY,4169
biopipen/scripts/snp/PlinkUpdateName.py,sha256=sYyb0ek46wRQfclFfoJEhQyQ-zWsFd2xpFHKw3jbsq4,4055
biopipen/scripts/stats/ChowTest.R,sha256=TmoDbFJfEFsd0ZKwMdqTJI0dacxvrtHkJ1FP6FhJpcM,3638
biopipen/scripts/stats/DiffCoexpr.R,sha256=kxiks9lRs5ssGfj1LdS3jetM_ILLVOXdiTjML6_0mHM,4537
biopipen/scripts/stats/LiquidAssoc.R,sha256=EBwIl7xf83hlqYs_h9wcdjGLjbmJwmMiR5FM0QGgZfk,3748
biopipen/scripts/stats/Mediation.R,sha256=3WFeltdENvx0v8P6m7DZbhuCSCMnBKE7B14e8ZLVYdU,3291
biopipen/scripts/stats/MetaPvalue.R,sha256=s1ewfMwwcSSihsvungyUhSiJF-PDet0wXenAHFJfdTI,4139
biopipen/scripts/stats/MetaPvalue1.R,sha256=Yearem_XmMaHfZbN_qmDSTNlvVddTSC5Z59zjVe_sno,1848
biopipen/scripts/tcgamaf/Maf2Vcf.py,sha256=Cxh7fiSNCxWDTfIJqZDOOnaSrw-85S_fH2U-PWY03hc,704
biopipen/scripts/tcgamaf/MafAddChr.py,sha256=V10HMisl12O3ZfXuRmFNdy5p-3mr43WCvy0GHxSpwfA,494
biopipen/scripts/tcgamaf/maf2vcf.pl,sha256=hJKcH-NbgWK6fmK7f3qex7ozJJl-PqCNPXqpwfcHwJg,22707
biopipen/scripts/tcr/Attach2Seurat.R,sha256=0KZaBkuPvqOBXq4ZG3pzIIua5HL-161K5dVXRoCysy4,1366
biopipen/scripts/tcr/CDR3AAPhyschem.R,sha256=3fWmoTwxVHM3CNnwxdKxy6-7Jul1UltoN4ic39aGTH0,16649
biopipen/scripts/tcr/CloneResidency.R,sha256=KAcFB39vTYsk8IEj44s8oSFVhKjpAdJ8hkpKxtdWzRA,21540
biopipen/scripts/tcr/CloneSizeQQPlot.R,sha256=hds1C80Q_W40Ikp-BrFfvh_aBf_V61lz-1YAvkDESyk,4569
biopipen/scripts/tcr/GIANA/GIANA.py,sha256=0qLhgCWxT8K-4JvORA03CzBPTT5pd4Di5B_DgrHXbFA,47198
biopipen/scripts/tcr/GIANA/GIANA4.py,sha256=Z7Q3cUr1Pvmy4CFADN0P7i9g1-HbzWROMqk5HvL_F1Q,45762
biopipen/scripts/tcr/GIANA/Imgt_Human_TRBV.fasta,sha256=XUwDPXJxVH5O9Q0gCL6EILKXEwVyiAZXm4VS2vkPcnQ,15371
biopipen/scripts/tcr/GIANA/query.py,sha256=5NWSEDNrJomMt48tzLGpRwJTZB0zQxvMVTilyG8osX8,7298
biopipen/scripts/tcr/Immunarch-basic.R,sha256=2UAQtGEDKgf5LmPeGlNkkAfQOCtdYpCiBMAn-JHOV4A,3036
biopipen/scripts/tcr/Immunarch-clonality.R,sha256=NN6WikD-9BKodgKRAbvM2oMLrhn9FUWjqIb69DpHnAk,3744
biopipen/scripts/tcr/Immunarch-diversity.R,sha256=6T8-IXIMyy4YXgIA4TXJThy91FqgLVsljqxd3PxLDys,27136
biopipen/scripts/tcr/Immunarch-geneusage.R,sha256=jcuZPxQq19Ics73OT58oGl34jSRghJAgT2JY-L99UgE,6764
biopipen/scripts/tcr/Immunarch-kmer.R,sha256=autd1IeFEgWpidg7o2tMVT6T8qDeqgIwLF_KyYmBMvU,6171
biopipen/scripts/tcr/Immunarch-overlap.R,sha256=zqQEgINJpwPP-WnTRA3GxFfKUOFxwmGCt_qIcT_Qndc,7418
biopipen/scripts/tcr/Immunarch-spectratyping.R,sha256=QFky_PqKYGAI-4-4UY7MoU7HitBImjHqFnxYaW5wQq0,2850
biopipen/scripts/tcr/Immunarch-tracking.R,sha256=Itqyq2j14vtdJldaSkbx4H389a_UcHpQjD-icXB-WMU,4336
biopipen/scripts/tcr/Immunarch-vjjunc.R,sha256=ipOU2ShjUQQSojWgBqRpCvG82Cv09qySAq0DiimHygc,4400
biopipen/scripts/tcr/Immunarch.R,sha256=MvkWbSYeevZAtyjrztWm6Kaw58SZqK_HpPyrL9JYq1k,4804
biopipen/scripts/tcr/Immunarch2VDJtools.R,sha256=QB9ILGbnsfoWaRANK6ceb14wpSWy8F1V1EdEmfIqiks,706
biopipen/scripts/tcr/ImmunarchFilter.R,sha256=xVuBa38SPQ7qSSynDwvyuYljs1M0yKaIhCQ2eWE3vOc,3995
biopipen/scripts/tcr/ImmunarchLoading.R,sha256=Vw2oIza3mDJzg9kuo-w5jvwdivk4AtDA6oF1RG1Sva8,5776
biopipen/scripts/tcr/ImmunarchSplitIdents.R,sha256=FGCeGV0uSmFU91lKkldUAeV4A2m3hHw5X4GNi8ffGzI,1873
biopipen/scripts/tcr/SampleDiversity.R,sha256=oipN4-2nQZe8bYjI0lZ0SvZ7T8GZ_FWkpkobi1cwmWE,2664
biopipen/scripts/tcr/TCRClusterStats.R,sha256=QhXgfKSh27VHO901hDizyGYTXMYFJxW22StchQUq3uE,12906
biopipen/scripts/tcr/TCRClustering.R,sha256=LOdq6NjKcRydGSSoYehILgH4vPCeHIbVpSEYev05578,9278
biopipen/scripts/tcr/TCRDock.py,sha256=jjzxMWp-hs0LDtA1mVbiWDvUieSO7X-F9yeKGy1LSTM,3026
biopipen/scripts/tcr/TESSA.R,sha256=XFC2P_e_Gm83jG5EjzVIW6KcyG5IieAaK7sXDA3_oZ0,6864
biopipen/scripts/tcr/TESSA_source/Atchley_factors.csv,sha256=SumqDOqP67P54uM7Cuc5_O_rySTWcGo7eX3psMSPX9s,763
biopipen/scripts/tcr/TESSA_source/BriseisEncoder.py,sha256=z4_Q_6StymffuUGGjHP1-B3aTsXtamKao5Q1-Kg9has,6831
biopipen/scripts/tcr/TESSA_source/MCMC_control.R,sha256=93Nnz0IG8KfFnVscZDvmBp1qccZoSoG_jIVpOWBQLHE,2911
biopipen/scripts/tcr/TESSA_source/TrainedEncoder.h5,sha256=U-z4jcmeDXnJQwgmXoIjeJvCj_R8f5wHsesDKYBaF98,457824
biopipen/scripts/tcr/TESSA_source/fixed_b.csv,sha256=tJJ2hUt0kJLZOxTH_vo_vd_CSbHa_W_JGa3jcOWrczY,570
biopipen/scripts/tcr/TESSA_source/initialization.R,sha256=TYPciAvWrrOVByfxdsqouEk8k9vgB45oW1jQFfUGLjM,3900
biopipen/scripts/tcr/TESSA_source/post_analysis.R,sha256=6RX7gdqd1N7lQVfwJBgjfEZEwi1Q4r15mpAthsLSSJ8,5090
biopipen/scripts/tcr/TESSA_source/real_data.R,sha256=tg3BbiTpRVQWBRZStnzkC2jI1PCmxUA0fjWK09J6grw,2448
biopipen/scripts/tcr/TESSA_source/update.R,sha256=kVrf6zgIkhhiQ2O55XGmxm_DGBKSpcShFgkyPNQIet0,6661
biopipen/scripts/tcr/TESSA_source/utility.R,sha256=6qbkMV7yp4bgQe718QiASQUAgOE2euiLgAXOeSqrvHQ,374
biopipen/scripts/tcr/VJUsage.R,sha256=LjHEbAHW3WriCYiM9-T6Esd4jc6pnoiSxBKTN_YA490,437
biopipen/scripts/tcr/immunarch-patched.R,sha256=6OAaV6arDVSI409VHuh1oMCuxlMQp-EaM-kkF-sTlCI,7007
biopipen/scripts/tcr/vdjtools-patch.sh,sha256=rL5qp2S18CrpqduKkeR1HVmmuWhCVJOMKJXvWiKdYIc,566
biopipen/scripts/vcf/BcftoolsAnnotate.py,sha256=iS-T6IhumqePW5kdyi_Tb6rubyIiCMjSTIRkGL_ad-U,2582
biopipen/scripts/vcf/BcftoolsFilter.py,sha256=AdQMXFTNLCS5eqYWMNIMbkK8qXJ5j8GYm7HdPopVk0c,2573
biopipen/scripts/vcf/BcftoolsSort.py,sha256=tU0pTrEIB-7x6iOSfU-KpYY1rEidi6Q4179NntY3cGc,3778
biopipen/scripts/vcf/BcftoolsView.py,sha256=Sj3KkYPpwQFo5kmZC5MRxItrSE5KVZi0jNYrRFck3Ow,2465
biopipen/scripts/vcf/TruvariBench.sh,sha256=80yLQ73OzSgsJ4ltzgpcWxYvvX1hFnCG8YSBhhhRQ9Y,765
biopipen/scripts/vcf/TruvariBenchSummary.R,sha256=Q1VCYqOZ-VI8lgXW6Yqmw6NkLH168e7V6eYFbr0W4EE,1516
biopipen/scripts/vcf/TruvariConsistency.R,sha256=6h20v8qztbl1KZInJwoSK_t5XwqhKMTMzPWNPhoAjlM,2314
biopipen/scripts/vcf/Vcf2Bed.py,sha256=LzyJ9qW1s5mbfF8maLc77_0rE98KMc2lq1R94_NFbSU,855
biopipen/scripts/vcf/VcfAnno.py,sha256=FW626rAs_WSU7AHQMKjfkYoByUGh_gVyJM97neGfOMo,802
biopipen/scripts/vcf/VcfDownSample.sh,sha256=yBlyoA8xyHPkVc1XAs1biNZmN7rDR-CMz8qVh2GGvuk,939
biopipen/scripts/vcf/VcfFilter.py,sha256=0clQi9XuN0B33xAquQ3e7ce1PZlzIOmOFctNA-dpdEw,1881
biopipen/scripts/vcf/VcfFix.py,sha256=r2bgwwb2hAMr42wjpFZSFcUDxGllvhkOaRY_r9sKLNE,1304
biopipen/scripts/vcf/VcfFix_utils.py,sha256=Ur1-nFFYYjg7HYiK_C6Is_MTZXFULKRTwTGqBD8jzyU,2299
biopipen/scripts/vcf/VcfIndex.py,sha256=kMOdB8O4UWvvxeEnAa3iZoH7_ySKHCJ0LOpEds0GXf4,635
biopipen/scripts/vcf/VcfIntersect.py,sha256=6u9tLlfmEhlSMkYLXurVOO2uU94JwKRegSHhCzliHX0,735
biopipen/scripts/vcf/VcfLiftOver.sh,sha256=-mb-aY0kbr62Audm8urEh3iLef_FREVWgt8hs3ELNK8,565
biopipen/scripts/vcf/VcfSplitSamples.py,sha256=GraKi7WluzDAvVVGljwd3Yif6MriniF8stZOmllZtgk,1528
biopipen/scripts/vcf/bcftools_utils.py,sha256=p91rZp0RG6AtbpYA_KuKCfa6T5aNKMq_rK95QPL7mMI,1514
biopipen/scripts/web/Download.py,sha256=WKC_t5ZEeJoKFyY9XwksHARcMbKmHMcxNEUDLMGJ0Cc,924
biopipen/scripts/web/DownloadList.py,sha256=cZvdi3LVzlATiTvAXe0uuDDXGqB5jcR2zHrMLCEb2U8,1130
biopipen/scripts/web/GCloudStorageDownloadBucket.py,sha256=DBPfQaIpm-W7-uBHZjwOqP_FaWLW9aIFooVnmfvTAa4,2657
biopipen/scripts/web/GCloudStorageDownloadFile.py,sha256=tZIZpDvWQyEhY4qIlRDF1NYRT-Ums8cIgElp00F0uz4,823
biopipen/scripts/web/gcloud_common.py,sha256=fLhW8eiBUSjn9scQzu3IQC_IFvFO3r_K3f8fTqxWEBw,1238
biopipen/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
biopipen/utils/caching.R,sha256=qANQqH8p-VpvD8V4VSoqSfp0TFr4esujC7x3OFZsJMw,1687
biopipen/utils/common_docstrs.py,sha256=Ow-g-yS5P7DEO37cP1X-xioRbYWygfQHxIuLIaDdrjs,6288
biopipen/utils/gene.R,sha256=EITppeN7dwXy7LnFELYHeRCSHImYno0JncLyVWEAXOM,3757
biopipen/utils/gene.py,sha256=ToRgAPYc8E72Hm6uYi84ImQaRMPZp5rN7O4CxK7vCag,4477
biopipen/utils/gsea.R,sha256=BUr4pwfo7ZyinOyNa4O4dDxA1c50qWb3lpph374Yw_A,9239
biopipen/utils/io.R,sha256=jIYdqdn0iRWfQYAZa5CjXi3fikqmYvPPLIXhobRe8sw,537
biopipen/utils/misc.R,sha256=qTninxi9XAM_3QJqwThflGA-j7p1aKpQ9Pjmix6Iy3U,12059
biopipen/utils/misc.py,sha256=nkQHa3GMc7Ce0N2GKmucbRc8BMXgZ2yr_SPbq9RYA4s,3740
biopipen/utils/mutate_helpers.R,sha256=Bqy6Oi4rrPEPJw0Jq32bVAwwBfZv7JJL9jFcK5x-cek,17649
biopipen/utils/plot.R,sha256=pzl37PomNeUZPxohHZ2w93j3Fc4T0Qrc62FF-9MTKdw,4417
biopipen/utils/reference.py,sha256=oi5evicLwHxF0KAIPNZohBeHJLJQNWFJH0cr2y5pgcg,5873
biopipen/utils/rnaseq.R,sha256=Ro2B2dG-Z2oVaT5tkwp9RHBz4dp_RF-JcizlM5GYXFs,1298
biopipen/utils/single_cell.R,sha256=pJjYP8bIZpNAtTQ32rOXhZxaM1Y-6D-xUcK3pql9tbk,4316
biopipen/utils/vcf.py,sha256=ajXs0M_QghEctlvUlSRjWQIABVF02wPdYd-0LP4mIsU,9377
biopipen-0.30.0.dist-info/METADATA,sha256=hX1BYgYwes-v9P9pgYQ-7iJO2D6LmdfJ0B9z3JZgeEk,882
biopipen-0.30.0.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
biopipen-0.30.0.dist-info/entry_points.txt,sha256=69SbeMaF47Z2DS40yo-qDyoBKmMmumrNnsjEZMOioCE,625
biopipen-0.30.0.dist-info/RECORD,,
