igraph
leidenalg
numpy
cython>=3
pathos>=0.3.2
futhark-ffi>=0.15
tqdm>=4.64.1
potpourri3d
pynndescent>=0.5.13
navis>=1.9.0
python-louvain
pot
pillow>=11.0
scipy>=1.10
scikit-image
tifffile
trimesh
mpltern>=1.0.0
scikit-dimension
matplotlib
pandas
networkx>=3
scikit-learn>=1.1

[dev]
mypy>=0.991
pytest>=7.2.1
pre-commit>=2.20.0
myst_parser
plotly
nbsphinx
black
flake8
ipywidgets
sphinx_rtd_theme

[dl]
torch>=2.4.0
torchvision>=0.19.0

[doc]
sphinx
myst_parser
nbsphinx
sphinx_rtd_theme
pandas
plotly

[notebooks]
ipywidgets
numba
mpltern
plotly
umap-learn
scanpy
torch>=2.4.0
torchvision>=0.19.0

[vis]
ipywidgets
mpltern
plotly
