Metadata-Version: 2.1
Name: NanoCount
Version: 0.2.4.post1
Summary: NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Home-page: https://github.com/a-slide/NanoCount/
Author: Adrien Leger
Author-email: aleg@ebi.ac.uk
License: MIT
Description: # NanoCount v0.2.4.post1
        
        ![NanoCount](./docs/pictures/NanoCount.png)
        
        [![GitHub license](https://img.shields.io/github/license/a-slide/NanoCount.svg)](https://github.com/a-slide/NanoCount/blob/master/LICENSE)
        [![Language](https://img.shields.io/badge/Language-Python3.6+-yellow.svg)](https://www.python.org/)
        [![DOI](https://zenodo.org/badge/142873004.svg)](https://zenodo.org/badge/latestdoi/142873004)
        [![Build Status](https://travis-ci.com/a-slide/NanoCount.svg?branch=master)](https://travis-ci.com/a-slide/NanoCount)
        
        [![PyPI version](https://badge.fury.io/py/NanoCount.svg)](https://badge.fury.io/py/NanoCount)
        [![PyPI downloads](https://pepy.tech/badge/NanoCount)](https://pepy.tech/project/NanoCount)
        [![Anaconda Version](https://anaconda.org/aleg/nanocount/badges/version.svg)](https://anaconda.org/aleg/nanocount)
        [![Anaconda Downloads](https://anaconda.org/aleg/nanocount/badges/downloads.svg)](https://anaconda.org/aleg/nanocount)
        ---
        
        **NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads**
        
        Full documentation is available at https://adrienleger.com/NanoCount/
        
        ---
        
        ### Disclaimer
        
        Please be aware that NanoCount is a research package that is still under development.
        
        The API, command line interface, and implementation might change without retro-compatibility.
        
        It was tested under Linux Ubuntu 16.04 and in an HPC environment running under Red Hat Enterprise 7.1.
        
        Thank you
        
        ### citation
        
        The repository is archived at Zenodo. If you use NanoCount please cite as follow:
        
        Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004
        
        ### licence
        
        MIT (https://mit-license.org/)
        
        Copyright © 2020 Adrien Leger
        
        ### Authors
        
        * Adrien Leger / aleg@ebi.ac.uk / https://adrienleger.com
        
        The package was inspired from https://github.com/jts/nanopore-rna-analysis by Jared Simpson
        
        * Jared Simpson (@jts)
        
        ### Classifiers
        
        * Development Status :: 3 - Alpha
        * Intended Audience :: Science/Research
        * Topic :: Scientific/Engineering :: Bio-Informatics
        * License :: OSI Approved :: MIT License
        * Programming Language :: Python :: 3
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.6
Description-Content-Type: text/markdown
