# Python
__pycache__/
*.py[cod]
*$py.class
*.so
*.egg-info/
*.egg
dist/
build/
*.whl

# Virtual environment
.venv/
venv/
env/

# IDE
.vscode/
.idea/
*.swp
*.swo
*~

# OS
.DS_Store
Thumbs.db

# Jupyter
.ipynb_checkpoints/

# Output
!src/nano_ext.outputs/
output/
example_output/
*.csv
*.tsv
!tests/expected_*.csv

# Internal docs (keep only README.md public)
*.md
!README.md

# Internal example scripts (real data paths, benchmarks)
examples/_bench_steps.py
examples/run_real_data.py

# Rust (future)
target/

# Data files (large)
data/
*.abf
*.fast5
*.pod5
*.dat
*.bin
!tests/fixtures/
