LICENSE
README.md
pyproject.toml
src/candy/__init__.py
src/candy/blast.py
src/candy/cazy.py
src/candy/cli.py
src/candy/config.py
src/candy/database.py
src/candy/domains.py
src/candy/external_tools.py
src/candy/fasta.py
src/candy/interpro.py
src/candy/itol.py
src/candy/merge.py
src/candy/network.py
src/candy/pipeline.py
src/candy/platform_utils.py
src/candy/uniparc.py
src/candy/alignment/__init__.py
src/candy/alignment/famsa.py
src/candy/alignment/mafft.py
src/candy/clustering/__init__.py
src/candy/clustering/cdhit.py
src/candy/clustering/mmseqs2.py
src/candy/clustering/mmseqs2_download.py
src/candy/curation/__init__.py
src/candy/curation/gemini.py
src/candy/curation/manual.py
src/candy/phylogenetics/__init__.py
src/candy/phylogenetics/fasttree.py
src/candy/phylogenetics/veryfasttree_builder.py
src/candy_cazyme.egg-info/PKG-INFO
src/candy_cazyme.egg-info/SOURCES.txt
src/candy_cazyme.egg-info/dependency_links.txt
src/candy_cazyme.egg-info/entry_points.txt
src/candy_cazyme.egg-info/requires.txt
src/candy_cazyme.egg-info/top_level.txt
tests/test_alignment_and_phylogenetics.py
tests/test_blast.py
tests/test_cazy.py
tests/test_cli.py
tests/test_clustering.py
tests/test_config.py
tests/test_curation.py
tests/test_database.py
tests/test_domains.py
tests/test_external_tools.py
tests/test_famsa_aligner.py
tests/test_fasta.py
tests/test_interpro.py
tests/test_itol.py
tests/test_merge.py
tests/test_mmseqs2_download.py
tests/test_network.py
tests/test_pipeline.py
tests/test_platform_utils.py
tests/test_uniparc.py
tests/test_veryfasttree_builder.py