#!/usr/bin/env python
# -*- coding: utf-8
"""Export misc data from target tables into TAB-delimited files"""

import sys
import argparse

import anvio
import anvio.terminal as terminal

from anvio.errors import ConfigError, FilesNPathsError
from anvio.tables.miscdata import MiscDataTableFactory


__author__ = "Developers of anvi'o (see AUTHORS.txt)"
__copyright__ = "Copyleft 2015-2018, the Meren Lab (http://merenlab.org/)"
__credits__ = []
__license__ = "GPL 3.0"
__version__ = anvio.__version__
__email__ = "a.murat.eren@gmail.com"
__requires__ = ['genes-db', 'pan-db', 'profile-db']
__provides__ = ['misc-data-items-txt', 'misc-data-layers-txt', 'misc-data-layer-orders-txt']
__description__ = "Export additional data or order tables in pan or profile databases for items or layers."


run = terminal.Run()


def main(args):
    table_for_additional_data = MiscDataTableFactory(args)
    table_for_additional_data.export(output_file_path=args.output_file)


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description=__description__)

    parser.add_argument(*anvio.A('pan-or-profile-db'), **anvio.K('pan-or-profile-db'))
    parser.add_argument(*anvio.A('target-data-table'), **anvio.K('target-data-table', {'required': True}))
    parser.add_argument(*anvio.A('target-data-group'), **anvio.K('target-data-group'))
    parser.add_argument(*anvio.A('output-file'), **anvio.K('output-file'))

    args = anvio.get_args(parser)

    try:
        main(args)
    except ConfigError as e:
        print(e)
        sys.exit(-1)
    except FilesNPathsError as e:
        print(e)
        sys.exit(-2)
