.gitignore
AGENTS.md
CHANGELOG.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
PUBLIC-SOURCE-MANIFEST.json
README.md
README.pypi.md
RECOMMENDATIONS.md
SECURITY.md
SOURCE-EXPORT.md
mkdocs.yml
pyproject.toml
requirements.txt
setup.py
.apatch/conformance.json
.apatch/enforcement.json
.apatch/sandbox.json
.cursor/hooks.json
.cursor/mcp.json
.cursor/hooks/apatch-deny-direct-edit.sh
.cursor/hooks/apatch-deny-mcp-mutate.sh
.cursor/hooks/apatch-deny-shell-mutate.sh
.cursor/rules/apatch-conformance.mdc
.cursor/rules/apatch-executable-specs.mdc
.cursor/rules/apatch-probe.mdc
.cursor/rules/apatch-protocol.mdc
.cursor/rules/apatch-remote.mdc
.github/workflows/apatch.yml
.github/workflows/ci.yml
apatch/__init__.py
apatch/agent_guidance.py
apatch/agent_playbooks.py
apatch/apatch_paths.py
apatch/apply_session.py
apatch/arch_check.py
apatch/arch_rules.py
apatch/artifact.py
apatch/artifact_governance.py
apatch/ast_window.py
apatch/auto_wire.py
apatch/avatar_compiler.py
apatch/avatar_delivery.py
apatch/avatar_evidence.py
apatch/avatar_runtime_config.py
apatch/backup.py
apatch/barrel_export.py
apatch/boundary_ast.py
apatch/boundary_ranker.py
apatch/boundary_scope.py
apatch/build_diagnose.py
apatch/capability.py
apatch/change_budget.py
apatch/cli.py
apatch/cli_concept.py
apatch/cli_conformance.py
apatch/cli_extension.py
apatch/cli_status.py
apatch/codex_approval.py
apatch/concept_clarify.py
apatch/concept_compile.py
apatch/concept_crud.py
apatch/concept_merge.py
apatch/concept_verify.py
apatch/conformance.py
apatch/consumer_profiles.py
apatch/contribution.py
apatch/contribution_delivery.py
apatch/contribution_export.py
apatch/dangling_refs.py
apatch/db_check.py
apatch/db_profiles.py
apatch/db_revision.py
apatch/db_run.py
apatch/db_safety.py
apatch/discovery.py
apatch/doc_outline.py
apatch/doctor.py
apatch/edge_lockstep.py
apatch/enforcement.py
apatch/enforcement_messages.py
apatch/episode.py
apatch/execution_proposal.py
apatch/failure_taxonomy.py
apatch/feedback_status.py
apatch/file_modes.py
apatch/gc.py
apatch/generate.py
apatch/git_commit.py
apatch/git_util.py
apatch/governed_work.py
apatch/governed_work_delivery.py
apatch/governed_work_mcp.py
apatch/governed_work_transport.py
apatch/graph_execute.py
apatch/impact.py
apatch/import_graph.py
apatch/import_paths.py
apatch/imports_resolver.py
apatch/inclusion.py
apatch/ingestor.py
apatch/json_mapping.py
apatch/knowledge_graph.py
apatch/lane.py
apatch/lane_context.py
apatch/layout_migrate.py
apatch/ledger_actor.py
apatch/manifest_bundle.py
apatch/manifest_validator.py
apatch/match_session.py
apatch/matcher.py
apatch/mcp_health.py
apatch/native_converter.py
apatch/native_refs.py
apatch/orchestrate.py
apatch/outcome_delivery.py
apatch/path_index.py
apatch/path_leases.py
apatch/pipeline_run.py
apatch/plan_adherence.py
apatch/plan_worker.py
apatch/platform_client.py
apatch/policy_lock.py
apatch/probe.py
apatch/project_index.py
apatch/project_status.py
apatch/reality.py
apatch/refactor_run.py
apatch/repair_map.py
apatch/replay.py
apatch/report_render.py
apatch/resolver.py
apatch/rfp_coverage.py
apatch/sandbox.py
apatch/sandbox_watch.py
apatch/scale_config.py
apatch/scip_ingest.py
apatch/scip_producer.py
apatch/sdd_integrity.py
apatch/semantic_parser.py
apatch/semantic_verify.py
apatch/service_secret.py
apatch/session_state.py
apatch/session_status.py
apatch/shared_maintenance.py
apatch/simulate.py
apatch/slug_close.py
apatch/slug_cockpit.py
apatch/slug_feedback_lint.py
apatch/slug_intake.py
apatch/slug_ratify.py
apatch/spec.py
apatch/spec_contract_resolver.py
apatch/spec_coverage.py
apatch/spec_cross_verify.py
apatch/spec_executor.py
apatch/spec_interference.py
apatch/spec_interference_l0.py
apatch/spec_needles_scaffold.py
apatch/spec_ownership.py
apatch/spec_plan.py
apatch/spec_rebind.py
apatch/spec_registry.py
apatch/spec_reverification.py
apatch/spec_run.py
apatch/spec_run_multi.py
apatch/strip.py
apatch/strip_cache.py
apatch/strip_pipeline.py
apatch/symbol_anchor.py
apatch/symbol_index.py
apatch/taxonomy_delivery.py
apatch/timesheet.py
apatch/tool_paths.py
apatch/toolchain.py
apatch/traceability.py
apatch/trust_identity.py
apatch/trustchain_helper.py
apatch/tui.py
apatch/ux_audit.py
apatch/verify_baseline.py
apatch/verify_jobs.py
apatch/verify_worker.py
apatch/warn_filters.py
apatch/wiring_profiles.py
apatch/work_asset_lifecycle.py
apatch/work_asset_suggest.py
apatch/work_assets.py
apatch/work_item_acceptance.py
apatch/workflows.py
apatch/workspace_identity.py
apatch/worktree_lane.py
apatch.egg-info/PKG-INFO
apatch.egg-info/SOURCES.txt
apatch.egg-info/dependency_links.txt
apatch.egg-info/entry_points.txt
apatch.egg-info/requires.txt
apatch.egg-info/top_level.txt
apatch/console/__init__.py
apatch/console/mvp.py
apatch/console/state.py
apatch/converters/__init__.py
apatch/converters/registry.py
apatch/converters/ts_module.py
apatch/diagnostics/__init__.py
apatch/diagnostics/artifacts.py
apatch/diagnostics/collect.py
apatch/diagnostics/edges.py
apatch/diagnostics/schema.py
apatch/diagnostics/adapters/__init__.py
apatch/diagnostics/adapters/clang.py
apatch/diagnostics/adapters/pytest.py
apatch/diagnostics/adapters/spec.py
apatch/diagnostics/adapters/trust.py
apatch/extensions/__init__.py
apatch/extensions/authoring.py
apatch/extensions/catalog.py
apatch/extensions/host.py
apatch/extensions/runner.py
apatch/extensions/schema.py
apatch/extensions/schemas/lock-v1.json
apatch/extensions/schemas/manifest-v1.json
apatch/extensions/schemas/request-v1.json
apatch/extensions/schemas/response-v1.json
apatch/mcp/__init__.py
apatch/mcp/__main__.py
apatch/mcp/bound_workspace.py
apatch/mcp/hygiene.py
apatch/mcp/launcher.py
apatch/mcp/lifecycle.py
apatch/mcp/profiles.py
apatch/mcp/resources.py
apatch/mcp/runtime_probe.py
apatch/mcp/sanitize.py
apatch/mcp/server.py
apatch/mcp/stdio_guard.py
apatch/mcp/workspace_launcher.py
apatch/mcp/workspace_registry.py
apatch/remote/__init__.py
apatch/remote/doctor.py
apatch/remote/errors.py
apatch/remote/handoff.py
apatch/remote/onboarding.py
apatch/remote/orchestrator.py
apatch/remote/policy.py
apatch/remote/services.py
apatch/remote/ssh.py
apatch/remote/target.py
apatch/remote/transport.py
apatch/remote/verify.py
apatch/remote/worker.py
apatch/runtime/__init__.py
apatch/runtime/atomic_io.py
apatch/runtime/attestation.py
apatch/runtime/domain.py
apatch/runtime/errors.py
apatch/runtime/events.py
apatch/runtime/finalization.py
apatch/runtime/hints.py
apatch/runtime/models.py
apatch/runtime/namespace.py
apatch/runtime/reconcile.py
apatch/runtime/recovery.py
apatch/runtime/request_journal.py
apatch/runtime/runtime.py
apatch/runtime/session.py
apatch/runtime/session_binding.py
apatch/runtime/state_machine.py
apatch/runtime/verification.py
apatch_search_workflows/__init__.py
apatch_search_workflows/feedback_status.py
apatch_search_workflows/repair_map.py
apatch_search_workflows/slug_close.py
apatch_search_workflows/slug_cockpit.py
apatch_search_workflows/slug_feedback_lint.py
apatch_search_workflows/slug_intake.py
apatch_search_workflows/slug_ratify.py
docs/AGENTS.template.md
docs/AVATAR-ARCHITECTURE-CANON.md
docs/AVATAR-UTILITY-CONTRACT.md
docs/PHASE_CHECKLIST.md
docs/README.md
docs/RFP-005-reference-monitor.md
docs/RFP-006-artifact-anchored-intent.md
docs/RFP-007-executable-specifications.md
docs/RFP-008-spec-executor.md
docs/RFP-009-spec-run.md
docs/RFP-014-spec-interference-detection.md
docs/RFP-015-ux-specialist.md
docs/RFP-016-runtime-hygiene.md
docs/RFP-018-build-diagnose.md
docs/RFP-019-mcp-scale-lifecycle.md
docs/RFP-020-three-views.md
docs/RFP-021-agent-reliability-design-partner.md
docs/RFP-022-unified-diagnostics-knowledge-graph.md
docs/RFP-023-rfp-spec-coverage.md
docs/RFP-024-needles-scaffold.md
docs/RFP-025-avatar-foundation.md
docs/RFP-026-contribution-timesheet.md
docs/RFP-027-agent-ux-recovery.md
docs/RFP-028-avatar-wiring.md
docs/RFP-029-remote-ssh-workspaces.md
docs/RFP-030-opaque-ssh-broker.md
docs/RFP-031-work-assets.md
docs/RFP-032-symbol-granular-anchoring.md
docs/RFP-033-scip-reference-impact.md
docs/RFP-034-concept-graph.md
docs/RFP-035-continuous-conformance.md
docs/RFP-036-transactional-multi-agent-sessions.md
docs/RFP-037-avatar-semantic-engine.md
docs/RFP-038-ledger-hot-path.md
docs/RFP-039-spec-owned-mutation-gate.md
docs/RFP-040-open-local-extensions.md
docs/RFP-041-governance-operations.md
docs/RFP-042-path-scoped-writer-leases.md
docs/RFP-043-trustchain-governed-work-bindings.md
docs/RFP-044-sdd-integrity-adoption.md
docs/RFP-045-sdd-verifier-closure.md
docs/RFP-046-oss-verification-profiles.md
docs/RFP-047-COWORK-SELECTIVE-DELIVERY.md
docs/agent-onboarding.md
docs/apatch-studio.md
docs/apatch-transformation-matrix.md
docs/conformance.md
docs/console-guide.md
docs/cookbook.md
docs/cpp_refactoring_guide.md
docs/design-partner-playbook.md
docs/domain.md
docs/engineering-truth-overview.md
docs/executable-specs.md
docs/extensions.md
docs/for-leaders.md
docs/fuzzing.md
docs/getting-started.md
docs/governed-runtime-invariants.md
docs/governed-work-trustchain.md
docs/grammar.md
docs/mcp_performance.md
docs/mcp_setup.md
docs/orchestration.md
docs/oss-verification-profiles.json
docs/oss-verification.md
docs/probe.md
docs/product-matrix.md
docs/public-release-readiness.md
docs/public-source-amendment.md
docs/public-source-portability.json
docs/reality.md
docs/release-versioning.md
docs/remote-onboarding.md
docs/rfp-authoring.md
docs/sandbox.md
docs/security-one-pager.md
docs/spec-authoring.md
docs/strip_guide.md
docs/transactional-mcp-sessions.md
docs/transparency-anchor.md
docs/vision.md
docs/work-assets-consent-retention.md
docs/work-assets-data-access.md
docs/work-assets-director-brief.md
docs/work-assets-engineering-guide.md
docs/work-assets-portability-policy.md
docs/work-assets-privacy-ip.md
docs/work-assets.md
docs/adr/ADR-001_Enterprise_Scale_Gaps.md
docs/adr/ADR-002_Agent_As_Asset_And_Ownership_Edge.md
docs/adr/README.md
docs/archive/README.md
docs/archive/RECOMMENDATIONS.md
docs/archive/RFP-001.md
docs/archive/RFP-002-strip-native-pipeline.md
docs/archive/RFP-003-agent-mcp-platform.md
docs/archive/RFP-004-mutation-runtime-console.md
docs/archive/arch_tools.md
docs/archive/db_tools.md
docs/archive/impact_tools.md
docs/archive/orchestration_roadmap.md
docs/ci/github-action-apatch.yml
docs/concepts/avatar-layer.md
docs/concepts/index.md
docs/contracts/RFP-044-owner-freeze.json
docs/contracts/SPEC-SDD-INTEGRITY-1-admission-amendment.json
docs/contracts/SPEC-SDD-INTEGRITY-1-runtime-amendment-a2.json
docs/contracts/SPEC-SDD-INTEGRITY-1-verification-contract.json
docs/contracts/SPEC-SDD-VERIFIER-CLOSURE-1-amendment-a001.json
docs/contracts/SPEC-SDD-VERIFIER-CLOSURE-1-amendment-a002.json
docs/contracts/SPEC-SDD-VERIFIER-CLOSURE-1-freeze.json
docs/contracts/apatch.change.v1.schema.json
docs/contracts/apatch.timesheet-draft.v1.schema.json
docs/contracts/apatch.work-evidence-bundle.v1.schema.json
docs/contracts/trustchain.governed-work-admission-receipt.v1.schema.json
docs/devcontainer/devcontainer.json
docs/examples/work_asset_export_v1.example.json
docs/examples/remote/remote.example.json
docs/manifests/arch-rules.example.yaml
docs/manifests/db-refactor.example.json
docs/manifests/doc-hygiene.json
docs/manifests/engineering-pipeline.example.json
docs/manifests/refactor-bundle.example.json
docs/manifests/semantic-verify.example.yaml
docs/methodology/ux-specialist/README.md
docs/profiles/cosmos-sdk.md
docs/profiles/django.md
docs/profiles/elasticsearch-opensearch.md
docs/profiles/frontend.md
docs/profiles/prisma.md
docs/profiles/sqlalchemy-alembic.md
docs/profiles/sqlite-embedded.md
docs/specs/README.md
docs/specs/RFP-016-IMPLEMENTATION.md
docs/specs/RFP-029-IMPLEMENTATION.md
docs/specs/SPEC-ADHERENCE-1.md
docs/specs/SPEC-AGENT-UX-1.md
docs/specs/SPEC-AGENT-UX-2.md
docs/specs/SPEC-APATCH-EXTENSIONS-1.md
docs/specs/SPEC-APATCH-TRANSACTIONAL-SESSIONS-1.md
docs/specs/SPEC-APPLY-IDEMPOTENT-1.md
docs/specs/SPEC-APPLY-OBS-1.md
docs/specs/SPEC-AVATAR-CONCEPTS-1.md
docs/specs/SPEC-AVATAR-CONTRACT-1.md
docs/specs/SPEC-AVATAR-EVIDENCE-1.md
docs/specs/SPEC-AVATAR-FOUNDATION-1.md
docs/specs/SPEC-BUILD-DIAGNOSE-1.md
docs/specs/SPEC-CAPABILITY-1.md
docs/specs/SPEC-CLI-STATUS-1.md
docs/specs/SPEC-CONCEPT-C4-1.md
docs/specs/SPEC-CONCEPT-CLARIFY-1.md
docs/specs/SPEC-CONCEPT-CLI-1.md
docs/specs/SPEC-CONCEPT-COMPILE-1.md
docs/specs/SPEC-CONCEPT-COVERAGE-1.md
docs/specs/SPEC-CONCEPT-CRUD-1.md
docs/specs/SPEC-CONCEPT-DEDUP-1.md
docs/specs/SPEC-CONCEPT-MERGE-1.md
docs/specs/SPEC-CONCEPT-READABLE-1.md
docs/specs/SPEC-CONCEPT-RENDER-1.md
docs/specs/SPEC-CONCEPT-STATUS-1.md
docs/specs/SPEC-CONCEPT-VERIFY-1.md
docs/specs/SPEC-CONCEPT-WIKI-1.md
docs/specs/SPEC-CONFORMANCE-GATE-1.md
docs/specs/SPEC-CONTRACT-EDGES-1.md
docs/specs/SPEC-CONTRIB-PIPE-1.md
docs/specs/SPEC-CONTRIB-TIMESHEET-1.md
docs/specs/SPEC-COVERAGE-1.md
docs/specs/SPEC-COWORK-SELECTIVE-DELIVERY-1.md
docs/specs/SPEC-DESIGN-PARTNER-1.md
docs/specs/SPEC-DIAGNOSTIC-GRAPH-1.md
docs/specs/SPEC-DOC-OUTLINE-1.md
docs/specs/SPEC-EDGE-LOCKSTEP-1.md
docs/specs/SPEC-EPISODE-1.md
docs/specs/SPEC-EXECUTOR-1.md
docs/specs/SPEC-FAILURE-TAXONOMY-2.md
docs/specs/SPEC-GC-1.md
docs/specs/SPEC-GOVERNANCE-OPERATIONS-1.md
docs/specs/SPEC-GOVERNED-WORK-BINDINGS-1.md
docs/specs/SPEC-HYGIENE-1.md
docs/specs/SPEC-HYGIENE-2.md
docs/specs/SPEC-HYGIENE-CORE.md
docs/specs/SPEC-INTERFERENCE-1.md
docs/specs/SPEC-INTERFERENCE-2.md
docs/specs/SPEC-INTERFERENCE-3.md
docs/specs/SPEC-INTERFERENCE-4.md
docs/specs/SPEC-INTERFERENCE-5.md
docs/specs/SPEC-KNOWLEDGE-GRAPH-1.md
docs/specs/SPEC-LANE-RESOLVE-1.md
docs/specs/SPEC-LAYOUT-1.md
docs/specs/SPEC-LEDGER-ACTOR-1.md
docs/specs/SPEC-LEDGER-HOT-PATH-1.md
docs/specs/SPEC-MCP-SCALE-1.md
docs/specs/SPEC-MONITOR-TAIL-1.md
docs/specs/SPEC-NEEDLES-HINT-1.md
docs/specs/SPEC-NOOP-ATTEST-CLI-1.md
docs/specs/SPEC-ONBOARDING-1.md
docs/specs/SPEC-OSS-VERIFICATION-PROFILES-1.md
docs/specs/SPEC-PATH-LEASES-1.md
docs/specs/SPEC-PLAN-ARTIFACT-1.md
docs/specs/SPEC-PRODUCT-STAB-1.md
docs/specs/SPEC-PROJECT-STATUS-1.md
docs/specs/SPEC-REALITY-STATUS-1.md
docs/specs/SPEC-REMOTE-OPACITY-1.md
docs/specs/SPEC-REMOTE-SSH-CORE-1.md
docs/specs/SPEC-REMOTE-SSH-MCP-1.md
docs/specs/SPEC-REMOTE-SSH-VERIFY-1.md
docs/specs/SPEC-REMOTE-SSH-WORKER-1.md
docs/specs/SPEC-REPORT-1.md
docs/specs/SPEC-RESUME-LIFECYCLE-1.md
docs/specs/SPEC-RFP-COVERAGE-1.md
docs/specs/SPEC-RUN-1.md
docs/specs/SPEC-SCIP-IMPACT-1.md
docs/specs/SPEC-SCIP-IMPACT-2.md
docs/specs/SPEC-SCIP-IMPACT-3.md
docs/specs/SPEC-SDD-INTEGRITY-1.md
docs/specs/SPEC-SDD-VERIFIER-CLOSURE-1.md
docs/specs/SPEC-SESSION-LIFECYCLE-1.md
docs/specs/SPEC-SESSION-RECOVERY-1.md
docs/specs/SPEC-SPEC-OWNERSHIP-GATE-1.md
docs/specs/SPEC-STATUS-BLOCKED-1.md
docs/specs/SPEC-SYMBOL-ANCHOR-1.md
docs/specs/SPEC-TEMPLATE.md
docs/specs/SPEC-UX-SPECIALIST-1.md
docs/specs/SPEC-VERIFY-ASYNC-1.md
docs/specs/SPEC-VERSION-1.md
docs/specs/SPEC-WORK-ASSET-EXPORT-1.md
docs/specs/SPEC-WORK-ASSET-INDEX-1.md
docs/specs/SPEC-WORK-ASSET-LIFECYCLE-1.md
docs/specs/SPEC-WORK-ASSET-SUGGEST-1.md
manifests/ENFORCEMENT.md
manifests/PROFILE.default.md
manifests/README.md
manifests/SANDBOX.md
manifests/SPEC-RUN-1.example.run.json
manifests/apatch.example.json
manifests/arch-rules.yaml
manifests/engineering-pipeline.example.json
manifests/package.scripts.snippet.json
manifests/semantic-verify.yaml
manifests/ux-audit.schema.json
notebooks/apatch_tutorial_beginner.ipynb
notebooks/apatch_tutorial_expert.ipynb
notebooks/apatch_tutorial_human_refactoring.ipynb
scripts/check_public_conformance.py
scripts/check_public_docs.py
scripts/convert_extracted_to_native.py
scripts/doc_hygiene.sh
scripts/extract_stripped_blocks.py
scripts/qualify_oss.py
scripts/verify_avatar_extra_local.py
scripts/ci/apatch-sandbox-gate.sh
scripts/cursor-hooks/apatch-deny-direct-edit.sh
scripts/cursor-hooks/apatch-deny-mcp-mutate.sh
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scripts/cursor-hooks/hooks.json
scripts/hooks/README.md
scripts/hooks/post-checkout
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tests/__init__.py
tests/conftest.py
tests/test_add_file_trailing_newline.py
tests/test_agent_guidance.py
tests/test_agent_playbooks.py
tests/test_agent_ux_phase2.py
tests/test_agent_ux_recovery.py
tests/test_agents_template.py
tests/test_apatch_reliability_fixes.py
tests/test_apply_baseline.py
tests/test_apply_deferred_last_chunk.py
tests/test_apply_idempotent.py
tests/test_apply_resume.py
tests/test_apply_session.py
tests/test_apply_session_dropped_steps.py
tests/test_apply_session_reset_verifying.py
tests/test_artifact.py
tests/test_artifact_governance.py
tests/test_auto_wire.py
tests/test_avatar_attestation_receipt.py
tests/test_avatar_compiler.py
tests/test_avatar_concepts.py
tests/test_avatar_contract_optional.py
tests/test_avatar_delivery.py
tests/test_avatar_docs_contract.py
tests/test_avatar_evidence.py
tests/test_avatar_runtime_config.py
tests/test_avatar_scope.py
tests/test_batch_needle_overlap.py
tests/test_boundary_assessment.py
tests/test_boundary_ast.py
tests/test_boundary_scope.py
tests/test_brand_fallback.py
tests/test_build_diagnose.py
tests/test_capability.py
tests/test_chain_ledger.py
tests/test_cli_commit_attested.py
tests/test_cli_status.py
tests/test_codex_approval.py
tests/test_commit_attested.py
tests/test_concept_c4.py
tests/test_concept_clarify.py
tests/test_concept_cli.py
tests/test_concept_compile.py
tests/test_concept_coverage.py
tests/test_concept_crud.py
tests/test_concept_dedup.py
tests/test_concept_merge.py
tests/test_concept_readable.py
tests/test_concept_render.py
tests/test_concept_status.py
tests/test_concept_verify.py
tests/test_concept_wiki.py
tests/test_conformance.py
tests/test_console_g5.py
tests/test_consumer_profile_roaming.py
tests/test_contract_edges.py
tests/test_contribution_delivery.py
tests/test_contribution_event.py
tests/test_contribution_export.py
tests/test_contribution_timesheet.py
tests/test_cowork_selective_delivery.py
tests/test_dangling_refs.py
tests/test_design_partner_playbook.py
tests/test_diagnostic_graph.py
tests/test_discovery.py
tests/test_distribution.py
tests/test_doc_outline.py
tests/test_docs_in_sync.py
tests/test_doctor.py
tests/test_edge_lockstep.py
tests/test_enforcement.py
tests/test_enforcement_messages.py
tests/test_episode.py
tests/test_execution_proposal.py
tests/test_extensions.py
tests/test_failure_taxonomy.py
tests/test_failure_taxonomy_v2.py
tests/test_falsify.py
tests/test_features.py
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