Metadata-Version: 2.1
Name: CIRI-long
Version: 1.0.1
Summary: circular RNA identification from Nanopore
Home-page: https://github.com/bioinfo-biols/CIRI-long
Author: Jinyang Zhang
Author-email: zhangjinyang@biols.ac.cn
Maintainer: Jinyang Zhang
Maintainer-email: zhangjinyang@biols.ac.cn
License: MIT
Keywords: circRNA
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Intended Audience :: Developers
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
Requires-Dist: argparse (==1.2.1)
Requires-Dist: Cython (==0.29.13)
Requires-Dist: mappy (==2.17)
Requires-Dist: numpy (==1.17.0)
Requires-Dist: pandas (==0.25.0)
Requires-Dist: pysam (==0.15.3)
Requires-Dist: python-Levenshtein (==0.12.1)
Requires-Dist: scikit-learn (==0.21.3)
Requires-Dist: scipy (==1.3.1)
Requires-Dist: biopython (==1.76)
Requires-Dist: pyspoa (==0.0.5)
Requires-Dist: bwapy (==0.1.4)

## CIRI-long: circular RNA identifier using long-read sequencing data

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Circular RNA Identification for Long-Reads Nanopore Sequencing Data

### Documentation

Documentation is available online at [https://ciri-cookbook.readthedocs.io/en/latest](https://ciri-cookbook.readthedocs.io/en/latest/CIRI-long_0_home.html#)

### Author

Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

### Release Notes

- version 1.0: First released version

### License

The code is released under the MIT License. See the `LICENSE` file for more detail

### Citing CIRI-long

Zhang, J., Hou, L., Zuo, Z., Ji, P., Zhang, X., Xue, Y., & Zhao, F. (2021). Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long. Nature Biotechnology. https://doi.org/10.1038/s41587-021-00842-6


