LICENSE.txt
MANIFEST.in
README
setup.py
ECLAIR.egg-info/PKG-INFO
ECLAIR.egg-info/SOURCES.txt
ECLAIR.egg-info/dependency_links.txt
ECLAIR.egg-info/entry_points.txt
ECLAIR.egg-info/requires.txt
ECLAIR.egg-info/top_level.txt
src/ECLAIR/__init__.py
src/ECLAIR/Build_instance/ECLAIR_core.py
src/ECLAIR/Build_instance/Scalable_SLINK.py
src/ECLAIR/Build_instance/__init__.py
src/ECLAIR/Build_instance/__main__.py
src/ECLAIR/Statistical_performance/Class_tree_edges.py
src/ECLAIR/Statistical_performance/Convergence_analysis.py
src/ECLAIR/Statistical_performance/Gaussian_KDE_HDF5.py
src/ECLAIR/Statistical_performance/Robustness_analysis.py
src/ECLAIR/Statistical_performance/Statistical_tests.py
src/ECLAIR/Statistical_performance/__init__.py
src/ECLAIR/Statistical_performance/__main__.py
src/ECLAIR/Statistical_performance/data/Guoji_data/qPCR.txt
src/ECLAIR/Statistical_performance/data/SPADE_data/nbt-SD2-Transformed.tsv.tar.gz
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_1/.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_1/._.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_1/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_1/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_1/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_10/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_10/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_10/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_2/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_2/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_2/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_3/.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_3/._.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_3/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_3/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_3/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_4/.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_4/._.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_4/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_4/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_4/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_5/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_5/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_5/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_6/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_6/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_6/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_7/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_7/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_7/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_8/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_8/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_8/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_9/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_9/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_same_dataset/training_9/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_1.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_2.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_3.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_1/.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_1/._.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_1/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_1/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_1/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_1/training_1.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_2/.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_2/._.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_2/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_2/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_2/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_2/training_2.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_3/.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_3/._.DS_Store
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_3/consensus_adjacency_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_3/consensus_labels.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_3/consensus_topological_distances_matrix.txt
src/ECLAIR/Statistical_performance/data/SPADE_test_sets/training_3/training_3.txt