Metadata-Version: 2.1
Name: bio2bel-mesh
Version: 0.2.0
Summary: A package for converting MeSH to BEL
Home-page: https://github.com/bio2bel/mesh
Author: Charles Tapley Hoyt
Author-email: charles.hoyt@scai.fraunhofer.de
Maintainer: Charles Tapley Hoyt
Maintainer-email: charles.hoyt@scai.fraunhofer.de
License: MIT License
Description: Bio2BEL MeSH |build| |coverage| |documentation|
        ===============================================
        Converts the MeSH hierarchy to BEL
        
        Installation |pypi_version| |python_versions| |pypi_license|
        ------------------------------------------------------------
        ``bio2bel_mesh`` can be installed easily from `PyPI <https://pypi.python.org/pypi/bio2bel_mesh>`_ with the
        following code in your favorite terminal:
        
        .. code-block:: sh
        
            $ python3 -m pip install bio2bel_mesh
        
        or from the latest code on `GitHub <https://github.com/bio2bel/mesh>`_ with:
        
        .. code-block:: sh
        
            $ python3 -m pip install git+https://github.com/bio2bel/mesh.git@master
        
        Setup
        -----
        MeSH can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
        
        Python REPL
        ~~~~~~~~~~~
        .. code-block:: python
        
            >>> import bio2bel_mesh
            >>> mesh_manager = bio2bel_mesh.Manager()
            >>> mesh_manager.populate()
        
        Command Line Utility
        ~~~~~~~~~~~~~~~~~~~~
        .. code-block:: bash
        
            bio2bel_mesh populate
        
        Links
        -----
        - `MeSH Tree Browser <https://meshb.nlm.nih.gov/#/treeSearch>`_
        - `SPARQL 1.1 Specification <https://www.w3.org/TR/sparql11-query/>`_
        - `MeSH Information <https://id.nlm.nih.gov/mesh/>`_
        - `MeSH FTP <ftp://ftp.nlm.nih.gov/online/mesh/>`_
        - `MeSH RDF Download <ftp://ftp.nlm.nih.gov/online/mesh/mesh.nt.gz>`_
        
        .. |build| image:: https://travis-ci.com/bio2bel/mesh.svg?branch=master
            :target: https://travis-ci.com/bio2bel/mesh
            :alt: Build Status
        
        .. |coverage| image:: https://codecov.io/gh/bio2bel/mesh/coverage.svg?branch=master
            :target: https://codecov.io/gh/bio2bel/mesh?branch=master
            :alt: Coverage Status
        
        .. |documentation| image:: https://readthedocs.org/projects/mesh/badge/?version=latest
            :target: http://mesh.readthedocs.io
            :alt: Documentation Status
        
        .. |climate| image:: https://codeclimate.com/github/bio2bel/mesh/badges/gpa.svg
            :target: https://codeclimate.com/github/bio2bel/mesh
            :alt: Code Climate
        
        .. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_mesh.svg
            :alt: Stable Supported Python Versions
        
        .. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_mesh.svg
            :alt: Current version on PyPI
        
        .. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_mesh.svg
            :alt: MIT License
        
Keywords: Biological Expression Language,BEL,Systems Biology,Networks Biology,MeSH
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Provides-Extra: owl
Provides-Extra: web
