LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
src/cansig/__init__.py
src/cansig/filesys.py
src/cansig/gsea.py
src/cansig/logger.py
src/cansig/multirun.py
src/cansig/tutorial.py
src/cansig/types.py
src/cansig.egg-info/PKG-INFO
src/cansig.egg-info/SOURCES.txt
src/cansig.egg-info/dependency_links.txt
src/cansig.egg-info/requires.txt
src/cansig.egg-info/top_level.txt
src/cansig/_preprocessing/__init__.py
src/cansig/_preprocessing/_infercnv.py
src/cansig/_preprocessing/annotation.py
src/cansig/_preprocessing/data.py
src/cansig/_preprocessing/infercnv.py
src/cansig/_preprocessing/main.py
src/cansig/_preprocessing/plotting.py
src/cansig/_preprocessing/quality_control.py
src/cansig/_preprocessing/scoring.py
src/cansig/_preprocessing/subclonal.py
src/cansig/_preprocessing/utils.py
src/cansig/cluster/__init__.py
src/cansig/cluster/api.py
src/cansig/cluster/leiden.py
src/cansig/cnvanalysis/__init__.py
src/cansig/cnvanalysis/differentialcnvs.py
src/cansig/integration/_CONSTANTS.py
src/cansig/integration/__init__.py
src/cansig/integration/model.py
src/cansig/integration/utils.py
src/cansig/integration/base/__init__.py
src/cansig/integration/base/model.py
src/cansig/integration/base/module.py
src/cansig/integration/data/__init__.py
src/cansig/integration/data/datasplitter.py
src/cansig/integration/data/fields.py
src/cansig/integration/module/__init__.py
src/cansig/integration/module/batcheffectvae.py
src/cansig/integration/module/cnvvae.py
src/cansig/integration/module/vae.py
src/cansig/integration/training/__init__.py
src/cansig/integration/training/runner.py
src/cansig/integration/training/trainer.py
src/cansig/integration/training/training_plan.py
src/cansig/interface/__init__.py
src/cansig/interface/cluster.py
src/cansig/metaanalysis/__init__.py
src/cansig/metaanalysis/heatmap.py
src/cansig/metaanalysis/repr_directory.py
src/cansig/metasignatures/WRC.py
src/cansig/metasignatures/__init__.py
src/cansig/metasignatures/api.py
src/cansig/metasignatures/clustering.py
src/cansig/metasignatures/utils.py
src/cansig/models/__init__.py
src/cansig/models/api.py
src/cansig/models/cansig.py
src/cansig/models/scvi.py
src/cansig/plotting/__init__.py
src/cansig/plotting/plotting.py
src/cansig/run/__init__.py
src/cansig/run/download.py
src/cansig/run/format.py
src/cansig/run/heatmap.py
src/cansig/run/integration.py
src/cansig/run/metasignatures.py
src/cansig/run/pipeline.py
src/cansig/run/postprocessing.py
src/cansig/run/split.py