Metadata-Version: 2.1
Name: MRdataset
Version: 0.4.1
Summary: MRdataset
Project-URL: Homepage, https://github.com/Open-Minds-Lab/MRdataset
Project-URL: Documentation, https://open-minds-lab.github.io/MRdataset/
Author-email: Harsh Sinha <sinha.harsh@pitt.edu>, Pradeep Raamana <raamana@gmail.com>
License: Apache Software License 2.0
        
        Copyright (c) 2022, Pradeep Raamana
        
        Licensed under the Apache License, Version 2.0 (the "License");
        you may not use this file except in compliance with the License.
        You may obtain a copy of the License at
        
        http://www.apache.org/licenses/LICENSE-2.0
        
        Unless required by applicable law or agreed to in writing, software
        distributed under the License is distributed on an "AS IS" BASIS,
        WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
        See the License for the specific language governing permissions and
        limitations under the License.
        
License-File: AUTHORS.rst
License-File: LICENSE
Keywords: MRdataset
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.8
Requires-Dist: dicom2nifti>=2.4.2
Requires-Dist: nibabel
Requires-Dist: numpy
Requires-Dist: protocol
Requires-Dist: pydicom
Description-Content-Type: text/x-rst

=====================================================================
MRdataset : unified interface to various neuroimaging dataset formats
=====================================================================

.. image:: https://img.shields.io/pypi/v/MRdataset.svg
        :target: https://pypi.python.org/pypi/MRdataset

.. image:: https://app.codacy.com/project/badge/Grade/4e6e129acb3340e3b422541be3924a90
        :target: https://app.codacy.com/gh/sinhaharsh/MRdataset/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade

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        :target: https://github.com/sinhaharsh/MRdataset/actions/workflows/continuous-integration.yml


.. image:: ./docs/images/hierarchy.jpg

Description
------------

* Provides a unified interface for horizontal and vertical traversal of various neuroimaging datasets (DICOM) and any other generic format etc.
* Ensures that the DICOM files are valid imaging DICOMs and provides the option to skip phantoms, localizer, head scouts etc.
* Provides flexibility to ignore automatically generated derived scans such as MoCo series, Single-band references, perfusion weighted scans.
* Verifies if each DICOM slice belongs to the same scan volume and, then subsequently organizes all scans are hierarchical fashion (Subject > Session > Sequence > Run)
* Identifies sequences acquired within the same session, which is especially useful for associating field maps with their corresponding functional (EPI) scans.


Documentation 
-------------

https://open-minds-lab.github.io/MRdataset/



