AUTHOR
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
capsul/__init__.py
capsul/__main__.py
capsul/api.py
capsul/info.py
capsul/run.py
capsul.egg-info/PKG-INFO
capsul.egg-info/SOURCES.txt
capsul.egg-info/dependency_links.txt
capsul.egg-info/requires.txt
capsul.egg-info/top_level.txt
capsul/attributes/__init__.py
capsul/attributes/attributes_factory.py
capsul/attributes/attributes_schema.py
capsul/attributes/completion_engine.py
capsul/attributes/completion_engine_factory.py
capsul/attributes/completion_engine_iteration.py
capsul/attributes/fom_completion_engine.py
capsul/attributes/test/__init__.py
capsul/attributes/test/test_attributed_process.py
capsul/attributes/test/test_fom_process.py
capsul/engine/__init__.py
capsul/engine/database.py
capsul/engine/database_json.py
capsul/engine/database_populse.py
capsul/engine/run.py
capsul/engine/settings.py
capsul/engine/module/__init__.py
capsul/engine/module/afni.py
capsul/engine/module/ants.py
capsul/engine/module/attributes.py
capsul/engine/module/axon.py
capsul/engine/module/fom.py
capsul/engine/module/freesurfer.py
capsul/engine/module/fsl.py
capsul/engine/module/matlab.py
capsul/engine/module/nipype.py
capsul/engine/module/python.py
capsul/engine/module/somaworkflow.py
capsul/engine/module/spm.py
capsul/engine/test/__init__.py
capsul/engine/test/test_capsul_engine.py
capsul/in_context/__init__.py
capsul/in_context/afni.py
capsul/in_context/ants.py
capsul/in_context/freesurfer.py
capsul/in_context/fsl.py
capsul/in_context/nipype.py
capsul/in_context/spm.py
capsul/pipeline/__init__.py
capsul/pipeline/json_io.py
capsul/pipeline/pipeline.py
capsul/pipeline/pipeline_construction.py
capsul/pipeline/pipeline_nodes.py
capsul/pipeline/pipeline_tools.py
capsul/pipeline/pipeline_workflow.py
capsul/pipeline/process_iteration.py
capsul/pipeline/python_export.py
capsul/pipeline/topological_sort.py
capsul/pipeline/xml.py
capsul/pipeline/custom_nodes/__init__.py
capsul/pipeline/custom_nodes/cv_node.py
capsul/pipeline/custom_nodes/loo_node.py
capsul/pipeline/custom_nodes/map_node.py
capsul/pipeline/custom_nodes/reduce_node.py
capsul/pipeline/custom_nodes/strcat_node.py
capsul/pipeline/custom_nodes/strconv.py
capsul/pipeline/test/__init__.py
capsul/pipeline/test/test_activation.py
capsul/pipeline/test/test_complex_pipeline_activations.py
capsul/pipeline/test/test_custom_nodes.py
capsul/pipeline/test/test_double_switch.py
capsul/pipeline/test/test_iterative_process.py
capsul/pipeline/test/test_optional_output_switch.py
capsul/pipeline/test/test_pipeline.py
capsul/pipeline/test/test_pipeline_parameters.py
capsul/pipeline/test/test_pipeline_with_temp.py
capsul/pipeline/test/test_pipeline_workflow.py
capsul/pipeline/test/test_proc_with_outputs.py
capsul/pipeline/test/test_process_iteration.py
capsul/pipeline/test/test_qc_nodes.py
capsul/pipeline/test/test_switch_optional_output.py
capsul/pipeline/test/test_switch_pipeline.py
capsul/pipeline/test/test_switch_subpipeline.py
capsul/pipeline/test/test_switch_subpipeline_one.json
capsul/pipeline/test/test_switch_subpipeline_two.json
capsul/pipeline/test/test_temporary.py
capsul/pipeline/test/fake_morphologist/__init__.py
capsul/pipeline/test/fake_morphologist/acpcorientation.py
capsul/pipeline/test/fake_morphologist/aimsconverter.py
capsul/pipeline/test/fake_morphologist/baladinnormalizationpipeline.py
capsul/pipeline/test/fake_morphologist/baladinnormalizationtoaims.py
capsul/pipeline/test/fake_morphologist/brainorientation.py
capsul/pipeline/test/fake_morphologist/brainsegmentation.py
capsul/pipeline/test/fake_morphologist/fslnormalization.py
capsul/pipeline/test/fake_morphologist/fslnormalizationtoaims.py
capsul/pipeline/test/fake_morphologist/greywhiteclassificationhemi.py
capsul/pipeline/test/fake_morphologist/greywhitemesh.py
capsul/pipeline/test/fake_morphologist/greywhitetopology.py
capsul/pipeline/test/fake_morphologist/histoanalysis.py
capsul/pipeline/test/fake_morphologist/importt1mri.py
capsul/pipeline/test/fake_morphologist/morphologist.py
capsul/pipeline/test/fake_morphologist/normalization.py
capsul/pipeline/test/fake_morphologist/normalization_aimsmiregister.py
capsul/pipeline/test/fake_morphologist/normalization_baladin.py
capsul/pipeline/test/fake_morphologist/normalization_fsl_reinit.py
capsul/pipeline/test/fake_morphologist/normalization_t1_spm12_reinit.py
capsul/pipeline/test/fake_morphologist/normalization_t1_spm8_reinit.py
capsul/pipeline/test/fake_morphologist/normalizationskullstripped.py
capsul/pipeline/test/fake_morphologist/pialmesh.py
capsul/pipeline/test/fake_morphologist/reorientanatomy.py
capsul/pipeline/test/fake_morphologist/scalpmesh.py
capsul/pipeline/test/fake_morphologist/skullstripping.py
capsul/pipeline/test/fake_morphologist/splitbrain.py
capsul/pipeline/test/fake_morphologist/spmnormalization.py
capsul/pipeline/test/fake_morphologist/spmsn3dtoaims.py
capsul/pipeline/test/fake_morphologist/sulcideeplabeling.py
capsul/pipeline/test/fake_morphologist/sulcigraph.py
capsul/pipeline/test/fake_morphologist/sulcigraphmorphometrybysubject.py
capsul/pipeline/test/fake_morphologist/sulcilabelling.py
capsul/pipeline/test/fake_morphologist/sulcilabellingann.py
capsul/pipeline/test/fake_morphologist/sulcilabellingspam.py
capsul/pipeline/test/fake_morphologist/sulcilabellingspamglobal.py
capsul/pipeline/test/fake_morphologist/sulcilabellingspamlocal.py
capsul/pipeline/test/fake_morphologist/sulcilabellingspammarkov.py
capsul/pipeline/test/fake_morphologist/sulciskeleton.py
capsul/pipeline/test/fake_morphologist/t1biascorrection.py
capsul/pipeline/test/fake_morphologist/talairachtransformation.py
capsul/pipeline/test/fake_morphologist/talairachtransformationfromnormalization.py
capsul/plugins/__init__.py
capsul/process/__init__.py
capsul/process/nipype_process.py
capsul/process/process.py
capsul/process/runprocess.py
capsul/process/xml.py
capsul/process/test/__init__.py
capsul/process/test/test_load_from_description.py
capsul/process/test/test_nipype_wrap.py
capsul/process/test/test_pipeline.xml
capsul/process/test/test_runprocess.py
capsul/process/test/test_traits.py
capsul/process/test/xml_pipeline.xml
capsul/qt_apps/__init__.py
capsul/qt_apps/capsulview
capsul/qt_apps/main_window.py
capsul/qt_apps/pipeline_viewer_app.py
capsul/qt_apps/resources/__init__.py
capsul/qt_apps/resources/capsul.ui
capsul/qt_apps/resources/change_view.png
capsul/qt_apps/resources/config.png
capsul/qt_apps/resources/controller.png
capsul/qt_apps/resources/exit.png
capsul/qt_apps/resources/help.png
capsul/qt_apps/resources/icones.py
capsul/qt_apps/resources/icones.qrc
capsul/qt_apps/resources/inspect.png
capsul/qt_apps/resources/logo.gif
capsul/qt_apps/resources/logo.png
capsul/qt_apps/resources/open.png
capsul/qt_apps/resources/play.png
capsul/qt_apps/resources/readme.txt
capsul/qt_apps/resources/search.png
capsul/qt_apps/resources/transfer.png
capsul/qt_apps/resources/view_result.png
capsul/qt_apps/utils/__init__.py
capsul/qt_apps/utils/application.py
capsul/qt_apps/utils/fill_treectrl.py
capsul/qt_apps/utils/find_pipelines.py
capsul/qt_apps/utils/window.py
capsul/qt_gui/__init__.py
capsul/qt_gui/board_widget.py
capsul/qt_gui/test/__init__.py
capsul/qt_gui/test/test_board_widget.py
capsul/qt_gui/widgets/__init__.py
capsul/qt_gui/widgets/activation_inspector.py
capsul/qt_gui/widgets/attributed_process_widget.py
capsul/qt_gui/widgets/links_debugger.py
capsul/qt_gui/widgets/pipeline_developer_view.py
capsul/qt_gui/widgets/pipeline_developper_view.py
capsul/qt_gui/widgets/pipeline_file_warning_widget.py
capsul/qt_gui/widgets/pipeline_user_view.py
capsul/qt_gui/widgets/settings_editor.py
capsul/qt_gui/widgets/viewer_widget.py
capsul/sphinxext/__init__.py
capsul/sphinxext/capsul_pipeline_rst.py
capsul/sphinxext/capsul_pipeline_view.py
capsul/sphinxext/capsul_sphinx_layout.py
capsul/sphinxext/capsul_usecases_rst.py
capsul/sphinxext/layoutdocgen.py
capsul/sphinxext/load_pilots.py
capsul/sphinxext/pipelinedocgen.py
capsul/sphinxext/usecasesdocgen.py
capsul/sphinxext/test/__init__.py
capsul/sphinxext/test/test_process_pipeline_doc.py
capsul/sphinxext/test/test_usercases_doc.py
capsul/study_config/__init__.py
capsul/study_config/config_utils.py
capsul/study_config/memory.py
capsul/study_config/process_instance.py
capsul/study_config/run.py
capsul/study_config/study_config.py
capsul/study_config/config_modules/__init__.py
capsul/study_config/config_modules/afni_config.py
capsul/study_config/config_modules/ants_config.py
capsul/study_config/config_modules/attributes_config.py
capsul/study_config/config_modules/brainvisa_config.py
capsul/study_config/config_modules/fom_config.py
capsul/study_config/config_modules/freesurfer_config.py
capsul/study_config/config_modules/fsl_config.py
capsul/study_config/config_modules/matlab_config.py
capsul/study_config/config_modules/nipype_config.py
capsul/study_config/config_modules/smartcaching_config.py
capsul/study_config/config_modules/somaworkflow_config.py
capsul/study_config/config_modules/spm_config.py
capsul/study_config/test/__init__.py
capsul/study_config/test/test_fsl_config.py
capsul/study_config/test/test_memory.py
capsul/study_config/test/test_run_in_study_config.py
capsul/study_config/test/test_run_process.py
capsul/study_config/test/test_soma_workflow.py
capsul/study_config/test/test_soma_workflow_with_kw.py
capsul/study_config/test/test_study_config_configuration.py
capsul/study_config/test/test_study_config_fom.py
capsul/subprocess/__init__.py
capsul/subprocess/afni.py
capsul/subprocess/ants.py
capsul/subprocess/fsl.py
capsul/subprocess/spm.py
capsul/test/__init__.py
capsul/test/__main__.py
capsul/test/coverage.py
capsul/test/test_capsul_modules_import.py
capsul/test/test_capsul_notebooks.py
capsul/utils/__init__.py
capsul/utils/finder.py
capsul/utils/version_utils.py
capsul/utils/test/__init__.py
capsul/utils/test/test_utils.py
doc/Makefile
doc/source/conf.py
doc/source/documentation.rst
doc/source/index.rst
doc/source/installation.rst
doc/source/status.rst
doc/source/_static/capsul_logo.svg
doc/source/_static/custom.css
doc/source/_static/find_read.png
doc/source/_static/pipeline_switch.png
doc/source/_static/workflow_switch.svg
doc/source/_static/css/bootstrap-responsive.css
doc/source/_static/css/bootstrap-responsive.min.css
doc/source/_static/css/bootstrap.css
doc/source/_static/css/bootstrap.min.css
doc/source/_static/js/bootstrap.js
doc/source/_static/js/bootstrap.min.js
doc/source/_templates/layout.html
doc/source/api/api.rst
doc/source/api/attributes.rst
doc/source/api/engine.rst
doc/source/api/in_context.rst
doc/source/api/index.rst
doc/source/api/info.rst
doc/source/api/pipeline.rst
doc/source/api/plugins.rst
doc/source/api/process.rst
doc/source/api/qt_apps.rst
doc/source/api/qt_gui.rst
doc/source/api/sphinxext.rst
doc/source/api/study_config.rst
doc/source/api/subprocess.rst
doc/source/api/utils.rst
doc/source/sphinxext/LICENSE.txt
doc/source/sphinxext/MANIFEST.in
doc/source/sphinxext/README.txt
doc/source/sphinxext/numpy_ext/__init__.py
doc/source/sphinxext/numpy_ext/docscrape.py
doc/source/sphinxext/numpy_ext/docscrape_sphinx.py
doc/source/sphinxext/numpy_ext/numpydoc.py
doc/source/tutorial/capsul_tutorial.ipynb
doc/source/tutorial/capsul_tutorial.ipynb.in
doc/source/tutorial/images/capsul_controller1.jpg
doc/source/tutorial/images/capsul_fom1.jpg
doc/source/tutorial/images/capsul_fom1_compl.jpg
doc/source/tutorial/images/capsul_fom1_controller.jpg
doc/source/tutorial/images/capsul_fom2.jpg
doc/source/tutorial/images/capsul_fom2_compl.jpg
doc/source/tutorial/images/capsul_iter1.jpg
doc/source/tutorial/images/capsul_pipeline1.jpg
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doc/source/tutorial/images/capsul_pipeline5.jpg
doc/source/tutorial/images/capsul_pipeline6.jpg
doc/source/tutorial/images/capsul_pipeline6b.jpg
doc/source/tutorial/images/capsul_pipeline7.jpg
doc/source/tutorial/images/capsul_pipeline_xml1.jpg
doc/source/tutorial/images/capsul_pipeline_xml1_controller.jpg
doc/source/tutorial/images/capsul_pipeline_xml2.jpg
doc/source/tutorial/images/capsul_pipeline_xml2_controller.jpg
doc/source/user_guide_tree/advanced_usage.rst
doc/source/user_guide_tree/index.rst
doc/source/user_guide_tree/xml_spec.rst