Metadata-Version: 1.0
Name: bioservices
Version: 1.0.3
Summary: Access to Biological Web Services from Python
Home-page: ['http://pypi.python.org/pypi/bioservices']
Author: Thomas Cokelaer
Author-email: cokelaer@ebi.ac.uk
License: GPL
Download-URL: ['http://pypi.python.org/pypi/bioservices']
Description: Bioservices  provides a framework to easily implement wrapper of Web Services. 
        It focuses on  Biological Web Services based WSDL/SOAP or REST protocols.
        
        The primary goal of **BioServices** is to use Python as a glue language to provide
        a programmatic access to several Web Services. By doing so, elaboration of  new
        applications that combine several of the wrapped Web Services should be
        fostered.
        
        One of the main philosophy of **BioServices** is to make use of the existing
        SOAP/WSDL facilities provided in biological databases, not to  re-invent new
        databases.
        
        So far, BioServices provides wrappers for about 10 Web Services including `KEGG <http://www.genome.jp/kegg/pathway.html>`_, `UniProt <http://www.uniprot.org/>`_, `BioModels <http://www.ebi.ac.uk/biomodels-main/>`_, `WikiPathway <http://www.wikipathways.org/index.php/WikiPathways>`_, `quickGO <http://www.ebi.ac.uk/QuickGO/WebServices.html>`_, `PSIQUIC <http://code.google.com/p/psicquic/>`_.
        
        Example using the UniProt Web Service to search for the zap70 specy in human
        organism::
        
            >>> from bioservices import UniProt
            >>> u = UniProt(verbose=False)
            >>> data = u.search("zap70+and+taxonomy:9606", format="tab", limit=3, columns="entry name,length,id, genes")
            >>> print(data)
            Entry name  Length  Entry   Gene names
            ZAP70_HUMAN 619 P43403  ZAP70 SRK
            B4E0E2_HUMAN    185 B4E0E2  
            RHOH_HUMAN  191 Q15669  RHOH ARHH TTF
        
        
        
        
Keywords: BioServices,Web Services,Biology,Kegg,KEGG,BioModels,EUtils,UniProt,PICR,ArrayExpress,QuickGO,PSICQUIC,Blast,BioMART,BioGRID,MIRIAM,BioMart,EUtils,ChEMBL,ChemSpider
Platform: Linux
Platform: Unix
Platform: MacOsX
Platform: Windows
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU Library or Lesser General Public License (LGPL)
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 2.7
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Scientific/Engineering :: Physics
