Metadata-Version: 2.0
Name: ndex-utils-dev
Version: 3.0.11.8
Summary: NDEx Python utilities.  Includes file conversion and importing functions
Home-page: https://www.ndexbio.org
Author: The NDEx Project
Author-email: contact@ndexbio.org
License: BSD
Keywords: network analysis biology
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python :: 2.7
Requires-Dist: bottle
Requires-Dist: gevent
Requires-Dist: gevent-websocket
Requires-Dist: ndex
Requires-Dist: networkx
Requires-Dist: requests
Requires-Dist: requests-toolbelt
Requires-Dist: scipy
Requires-Dist: urllib3 (>=1.16)

# ndex-python-utilities

In addition to python, these utilities require some additional modules.

To install these modules, type the following commands:

```shell
pip install requests
pip install requests-toolbelt
pip install ndex
```

Utility Scripts:

In all scripts that have arguments username and password, these will be the username and password for the NDEx account that you are using. 

upload-to-ndex.py

```shell
python upload-to-ndex.py <username> <password> <directory>
```

Where <i>directory</i> contains all of the network files you want to upload.

create_network_from_tsv.py

```shell
python create_network_from_tsv.py <username> <password> <ndex server> <tsv file> <import plan file> <network name> <network description> 
```
change_network_descriptions.py

change_network_versions.py

make_networks_public.py

make_networks_private.py

delete_all_networks.py

get_user_account_statistics.py

download_pc_pathways.py

```shell
download_pc_pathways.py <datasource> <format>
```



