README.rst
setup.py
DeepGMAP.egg-info/PKG-INFO
DeepGMAP.egg-info/SOURCES.txt
DeepGMAP.egg-info/dependency_links.txt
DeepGMAP.egg-info/requires.txt
DeepGMAP.egg-info/top_level.txt
bin/deepgmap
deepgmap/__init__.py
deepgmap/data_preprocessing_tools/__init__.py
deepgmap/data_preprocessing_tools/bed_file_500.py
deepgmap/data_preprocessing_tools/bed_file_500_add_seq.py
deepgmap/data_preprocessing_tools/bed_file_500_add_seq2.py
deepgmap/data_preprocessing_tools/genome_divider.py
deepgmap/data_preprocessing_tools/genome_file_maker.py
deepgmap/data_preprocessing_tools/genome_labeling.py
deepgmap/data_preprocessing_tools/genome_labeling2.py
deepgmap/data_preprocessing_tools/genome_labeling_compare.py
deepgmap/data_preprocessing_tools/inputGenerator_from_deepsea.py
deepgmap/data_preprocessing_tools/input_generator_from_narrowPeaks2.py
deepgmap/data_preprocessing_tools/input_generator_from_narrowPeaks_tar.py
deepgmap/data_preprocessing_tools/inputfileGenerator_multiple_label3.py
deepgmap/data_preprocessing_tools/pick_one_chromosome.py
deepgmap/data_preprocessing_tools/remove_chr.py
deepgmap/data_preprocessing_tools/remove_excess_negatives.py
deepgmap/data_preprocessing_tools/remove_variant_annotations.py
deepgmap/data_preprocessing_tools/seq_to_binary.py
deepgmap/data_preprocessing_tools/seq_to_binary2.c
deepgmap/data_preprocessing_tools/seq_to_binary2.pyx
deepgmap/data_preprocessing_tools/setup.py
deepgmap/misc/Constants.py
deepgmap/misc/TSS_bedfile.py
deepgmap/misc/__init__.py
deepgmap/misc/bed_file_compare.py
deepgmap/misc/bed_file_compare2.py
deepgmap/misc/box_plot.py
deepgmap/misc/compare_deepsea_data.py
deepgmap/misc/dataset_checker.py
deepgmap/misc/dataset_checker_multiple_label.py
deepgmap/misc/deepsea_anal.py
deepgmap/misc/edit_labeled_file.py
deepgmap/misc/fasta_file_from_labeled.py
deepgmap/misc/fix_fasta.py
deepgmap/misc/gff_to_colored_bed.py
deepgmap/misc/kernel_distribution_analizer.py
deepgmap/misc/motif_logo_creator.py
deepgmap/misc/optimal_frip_cutoff.py
deepgmap/misc/pickup_pos_seq_region.py
deepgmap/misc/randomdna.py
deepgmap/misc/randomdna2.py
deepgmap/misc/reduce_negatives.py
deepgmap/misc/small_tools.py
deepgmap/misc/spearman_r.py
deepgmap/network_constructors/__init__.py
deepgmap/network_constructors/auc_calc.py
deepgmap/network_constructors/basset.py
deepgmap/network_constructors/conv3frss.py
deepgmap/network_constructors/conv3rc.py
deepgmap/network_constructors/conv4.py
deepgmap/network_constructors/conv4frss.py
deepgmap/network_constructors/conv4frss2.py
deepgmap/network_constructors/conv4frss3.py
deepgmap/network_constructors/conv4frssplus.py
deepgmap/network_constructors/conv4frssplus2.py
deepgmap/network_constructors/conv4frssplus3.py
deepgmap/network_constructors/conv4frssplus4.py
deepgmap/network_constructors/danq.py
deepgmap/network_constructors/danq3.py
deepgmap/network_constructors/danq4.py
deepgmap/network_constructors/danqblock.py
deepgmap/network_constructors/danqfrss.py
deepgmap/network_constructors/deepsea.py
deepgmap/network_constructors/template_model.py
deepgmap/post_train_tools/Clustering_analizer.py
deepgmap/post_train_tools/PCA.py
deepgmap/post_train_tools/ROC_space_plotter.py
deepgmap/post_train_tools/ROC_space_plotter2.py
deepgmap/post_train_tools/ROC_space_plotter3.py
deepgmap/post_train_tools/__init__.py
deepgmap/post_train_tools/activation_maximization.py
deepgmap/post_train_tools/class_saliency_extraction.py
deepgmap/post_train_tools/compare_narrowPeak_scores.py
deepgmap/post_train_tools/cython_util.c
deepgmap/post_train_tools/cython_util.pyx
deepgmap/post_train_tools/deconv_deepshark_local3.py
deepgmap/post_train_tools/deconv_deepshark_local4.py
deepgmap/post_train_tools/deconv_deepshark_local_extend.py
deepgmap/post_train_tools/deconvolution_to_signal.py
deepgmap/post_train_tools/fimo_to_numpy_array.py
deepgmap/post_train_tools/inputfileGeneratorForGenomeScan_gwas.py
deepgmap/post_train_tools/inputfileGeneratorForGenomeScan_p.py
deepgmap/post_train_tools/inputfileGeneratorForGenomeScan_p2.py
deepgmap/post_train_tools/kernel_visualizer.py
deepgmap/post_train_tools/kernel_visualizer2.py
deepgmap/post_train_tools/liftover_indiv_genome_to_hg38.py
deepgmap/post_train_tools/merge_bigwig.py
deepgmap/post_train_tools/motif_compare.py
deepgmap/post_train_tools/motif_compare2.py
deepgmap/post_train_tools/precision_recall_handmade.py
deepgmap/post_train_tools/predict.py
deepgmap/post_train_tools/randomize_labels.py
deepgmap/post_train_tools/sequence_visualizer.py
deepgmap/post_train_tools/sequence_visualizer2.py
deepgmap/post_train_tools/trained_deepshark_local2_for_deepsea_data.py
deepgmap/post_train_tools/trained_deepshark_local_multiple_label.py
deepgmap/post_train_tools/trained_deepshark_local_pca.py
deepgmap/post_train_tools/unpooling.py
deepgmap/train/__init__.py
deepgmap/train/deepshark_local_oop_1d.py
deepgmap/train/train_loop.py