FlowIO==1.4.0
FlowUtils==1.2.2
numpy<3,>=2.0
pandas>=2.2.2
scipy>=1.15
scikit-learn>=1.6
openpyxl>=3.1.5
PhenoGraph==1.5.7
umap-learn==0.5.12
igraph==1.0.0
leidenalg==0.11.0
matplotlib>=3.8.4
seaborn>=0.12
psutil>=5.9.4

[dev]
pytest>=8.0
pytest-xdist>=3.5
pyright==1.1.410
ruff==0.15.19
vulture>=2.16

[embed]
trimap>=1.1.4
pacmap>=0.7.3
phate>=1.0.11

[gpu]
cupy-cuda12x>=13
nvidia-cublas-cu12
nvidia-cuda-runtime-cu12
nvidia-cuda-nvrtc-cu12
nvidia-nvjitlink-cu12

[gpu-dml]
torch-directml>=0.2

[gpu-torch]
torch>=2.4

[gui]
tkinterdnd2==0.4.3

[interop]
anndata>=0.10
