CHANGELOG.md
LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
scripts/bench_accelerators.py
scripts/bench_louvain_restarts.py
scripts/bench_snn_prune.py
scripts/bench_ui_responsiveness.py
scripts/bench_umap_knn.py
scripts/lowest_direct_requirements.py
scripts/make_synthetic_dataset.py
scripts/migrate_session.py
scripts/mutate_controls.py
scripts/preflight.py
scripts/publish_public.py
scripts/run_analyses.py
scripts/smoke_test.py
scripts/theme_audit.py
src/openflo/__init__.py
src/openflo/_console.py
src/openflo/_golden.json
src/openflo/annotate.py
src/openflo/async_task.py
src/openflo/audit.py
src/openflo/calibration.py
src/openflo/capabilities.py
src/openflo/cli.py
src/openflo/comp_qc.py
src/openflo/compare.py
src/openflo/compliance.py
src/openflo/density.py
src/openflo/diagnostics.py
src/openflo/diffexp.py
src/openflo/dr_compare.py
src/openflo/editor_analysis.py
src/openflo/editor_audit.py
src/openflo/editor_autoclean.py
src/openflo/editor_autogate.py
src/openflo/editor_base.py
src/openflo/editor_channels.py
src/openflo/editor_chrome.py
src/openflo/editor_clipboard.py
src/openflo/editor_compute.py
src/openflo/editor_console.py
src/openflo/editor_dnd.py
src/openflo/editor_downsample.py
src/openflo/editor_export.py
src/openflo/editor_figure.py
src/openflo/editor_gatetools.py
src/openflo/editor_gating.py
src/openflo/editor_grouping.py
src/openflo/editor_help.py
src/openflo/editor_lifecycle.py
src/openflo/editor_load.py
src/openflo/editor_loadpool.py
src/openflo/editor_menu.py
src/openflo/editor_mode.py
src/openflo/editor_plot.py
src/openflo/editor_populations.py
src/openflo/editor_session.py
src/openflo/editor_slider.py
src/openflo/editor_stats.py
src/openflo/editor_template.py
src/openflo/editor_tools.py
src/openflo/editor_tree.py
src/openflo/editor_undo.py
src/openflo/editor_update.py
src/openflo/fcs_export.py
src/openflo/gatetree.py
src/openflo/gating.py
src/openflo/gating_helpers.py
src/openflo/gpu_accel.py
src/openflo/gui.py
src/openflo/inspect_fcs.py
src/openflo/interop.py
src/openflo/paths.py
src/openflo/pipeline.py
src/openflo/plotmath.py
src/openflo/prefs.py
src/openflo/preview.py
src/openflo/provenance.py
src/openflo/py.typed
src/openflo/report.py
src/openflo/scales.py
src/openflo/selftest.py
src/openflo/selftest_controls.py
src/openflo/session_format.py
src/openflo/spectral.py
src/openflo/stats.py
src/openflo/synthetic.py
src/openflo/theme.py
src/openflo/tool_window.py
src/openflo/trajectory.py
src/openflo/tree_ids.py
src/openflo/ui_abscounts.py
src/openflo/ui_annotation.py
src/openflo/ui_audit.py
src/openflo/ui_autogate.py
src/openflo/ui_axis_config.py
src/openflo/ui_calibration.py
src/openflo/ui_cell_cycle.py
src/openflo/ui_comp.py
src/openflo/ui_compare.py
src/openflo/ui_diff.py
src/openflo/ui_embedding.py
src/openflo/ui_expression.py
src/openflo/ui_figure_layout.py
src/openflo/ui_figure_window.py
src/openflo/ui_flowsom_tree.py
src/openflo/ui_fmo.py
src/openflo/ui_frequency.py
src/openflo/ui_group_stats.py
src/openflo/ui_inspect.py
src/openflo/ui_logic.py
src/openflo/ui_methods.py
src/openflo/ui_preferences.py
src/openflo/ui_preview.py
src/openflo/ui_sample_qc.py
src/openflo/ui_spectral_qc.py
src/openflo/ui_spectral_unmix.py
src/openflo/ui_statistics.py
src/openflo/ui_synth.py
src/openflo/ui_tips.py
src/openflo/ui_trajectory.py
src/openflo/ui_voltage.py
src/openflo/update.py
src/openflo/voltage.py
src/openflo/warmup.py
src/openflo/workspace.py
src/openflo.egg-info/PKG-INFO
src/openflo.egg-info/SOURCES.txt
src/openflo.egg-info/dependency_links.txt
src/openflo.egg-info/entry_points.txt
src/openflo.egg-info/requires.txt
src/openflo.egg-info/top_level.txt
src/openflo/template_library/README.md
src/openflo/template_library/cleanup_acquisition_qc.json
src/openflo/template_library/cleanup_minimal.json
src/openflo/template_library/cleanup_standard.json
src/openflo/template_library/cleanup_strict.json
src/openflo/template_library/example_panel.json
templates/testtemplate.json
tests/__init__.py
tests/conftest.py
tests/test_abscounts.py
tests/test_annotate.py
tests/test_apply_region_gates.py
tests/test_async_task.py
tests/test_audit.py
tests/test_autoclean_counts.py
tests/test_autoclean_doublets_scale.py
tests/test_autoclean_methods.py
tests/test_autogate.py
tests/test_autogate_reproducible.py
tests/test_boolean_gate_fails_closed.py
tests/test_calibration.py
tests/test_capabilities.py
tests/test_cell_cycle.py
tests/test_cli_cluster.py
tests/test_cli_e2e.py
tests/test_cli_unmix.py
tests/test_clipboard_move_marker.py
tests/test_cluster_labels.py
tests/test_cluster_reproducible.py
tests/test_clustering_reproducible.py
tests/test_comp_editor.py
tests/test_comp_matrix_csv_quoting.py
tests/test_comp_qc.py
tests/test_compare.py
tests/test_compare_all.py
tests/test_compare_conditions_absent_clusters.py
tests/test_compensation.py
tests/test_compliance.py
tests/test_console_encoding.py
tests/test_cytonorm.py
tests/test_cytonorm_qc_undefined.py
tests/test_degenerate_scatter_gating.py
tests/test_density.py
tests/test_diagnostics.py
tests/test_diagnostics_selftest_gate.py
tests/test_dialog_tooltips.py
tests/test_diff_abundance_small_n.py
tests/test_diffabundance.py
tests/test_diffexp.py
tests/test_doctor_tk_check.py
tests/test_dr_compare.py
tests/test_drag_tree_refresh.py
tests/test_editor_mixins.py
tests/test_ellipsoid_quadrant.py
tests/test_embedding.py
tests/test_embeddings.py
tests/test_exceptions.py
tests/test_exit_autosave.py
tests/test_fast_graph.py
tests/test_fcs_export.py
tests/test_figure_layout.py
tests/test_flowsom.py
tests/test_flowsom_mst.py
tests/test_gate_editor_helpers.py
tests/test_gate_impl_parity.py
tests/test_gate_import_fixes.py
tests/test_gate_mask_cache.py
tests/test_gate_nonfinite_events.py
tests/test_gate_partition.py
tests/test_gate_replication_parent.py
tests/test_gatetree.py
tests/test_gating.py
tests/test_gating_helpers.py
tests/test_golden_regression.py
tests/test_gpu_accel.py
tests/test_group_stats.py
tests/test_group_summary_sd.py
tests/test_grouping.py
tests/test_gui_smoke.py
tests/test_gui_toolings.py
tests/test_gui_ux.py
tests/test_histogram_offscale_note.py
tests/test_histogram_resolution.py
tests/test_import_is_lazy.py
tests/test_interop.py
tests/test_interop_h5ad_roundtrip.py
tests/test_label_align.py
tests/test_legend_placement.py
tests/test_leiden.py
tests/test_load_no_copy.py
tests/test_loader_queue.py
tests/test_log_histogram_range.py
tests/test_log_transform_nonpositive.py
tests/test_mem_tiny_clusters.py
tests/test_no_plausible_fills.py
tests/test_normalise_groups_idempotent.py
tests/test_not_gate_excludes_unmeasured.py
tests/test_panel_pairs.py
tests/test_paths.py
tests/test_plot_density.py
tests/test_plotmath.py
tests/test_polygon_gating.py
tests/test_population_stats_geomean.py
tests/test_preferences_wiring.py
tests/test_prefs.py
tests/test_prepare_unit_tags.py
tests/test_preview_quadrants.py
tests/test_propagate_downsample_order.py
tests/test_provenance.py
tests/test_provenance_unreadable_entries.py
tests/test_qc.py
tests/test_qc_ignores_derived_columns.py
tests/test_qc_integer_channels.py
tests/test_quality_correctness.py
tests/test_raw_not_aliased.py
tests/test_report.py
tests/test_resume_and_transfer_hygiene.py
tests/test_scales.py
tests/test_scales_logicle.py
tests/test_seed_phrases.py
tests/test_selftest.py
tests/test_selftest_controls.py
tests/test_session.py
tests/test_session_continuity.py
tests/test_session_json_is_valid.py
tests/test_session_migration_machinery.py
tests/test_session_sidecar_collision.py
tests/test_spectral.py
tests/test_spectral_degenerate_reference.py
tests/test_spectral_unmix_nonfinite.py
tests/test_stats.py
tests/test_stats_multigroup.py
tests/test_survivor_boundaries.py
tests/test_synthetic.py
tests/test_templates.py
tests/test_theme.py
tests/test_tool_window.py
tests/test_trajectory.py
tests/test_trajectory_nonfinite.py
tests/test_transform_nonfinite.py
tests/test_transforms.py
tests/test_tree_ids.py
tests/test_ui_compare.py
tests/test_ui_dialogs_smoke.py
tests/test_ui_inspect.py
tests/test_ui_logic.py
tests/test_ui_preview.py
tests/test_ui_sample_qc.py
tests/test_ui_synth.py
tests/test_ui_voltage.py
tests/test_umap_embedding.py
tests/test_undo_redo.py
tests/test_update.py
tests/test_voltage.py
tests/test_warmup.py
tests/test_workspace.py
tests/test_workspace_prep_offthread.py
tests/test_write_fcs.py
tests/test_wsp_extract.py
tests/test_wsp_partial_matrix.py
tests/test_wsp_population_names.py
tests/test_wsp_writer.py