setup.py
bin/epic
bin/epic-effective
bioepic.egg-info/PKG-INFO
bioepic.egg-info/SOURCES.txt
bioepic.egg-info/dependency_links.txt
bioepic.egg-info/requires.txt
bioepic.egg-info/top_level.txt
epic/__init__.py
epic/version.py
epic/config/__init__.py
epic/config/cache_settings.py
epic/config/constants.py
epic/config/genomes.py
epic/config/logging_settings.py
epic/pool/__init__.py
epic/pool/index/__init__.py
epic/pool/index/create_index_for_epic_bin_file.py
epic/pool/index/find_chunks_start_and_ends.py
epic/pool/index/get_bin_file_idx.py
epic/pool/index/get_genome_locations.py
epic/pool/index/split_genome_regions_into_chunks.py
epic/pool/merge/__init__.py
epic/pool/merge/append_chunk_to_file.py
epic/pool/merge/get_chunks.py
epic/pool/merge/horizontally_merge_chunks.py
epic/pool/merge/merge_files.py
epic/pool/merge/read_chunk.py
epic/pool/merge/write_infile_headers_to_merged_outfile.py
epic/pool/post_process/__init__.py
epic/pool/post_process/get_merged_df_with_island_count_sum.py
epic/pool/post_process/get_number_of_islands_in_each_bin_per_sample.py
epic/run/__init__.py
epic/run/run_epic.py
epic/scripts/__init__.py
epic/scripts/effective_genome_size.py
epic/statistics/__init__.py
epic/statistics/add_to_island_expectations.py
epic/statistics/add_to_island_expectations_cython.c
epic/statistics/compute_background_probabilites.py
epic/statistics/compute_poisson.py
epic/statistics/compute_score_threshold.py
epic/statistics/compute_values_needed_for_recurrence.py
epic/statistics/compute_window_score.py
epic/statistics/count_to_pvalue.py
epic/statistics/fdr.py
epic/statistics/generate_cumulative_distribution.py
epic/statistics/statistics.py
epic/utils/__init__.py
epic/utils/helper_functions.py
epic/utils/separate_input_and_chip_infiles.py
epic/windows/__init__.py
epic/windows/cluster/__init__.py
epic/windows/cluster/find_islands.py
epic/windows/count/__init__.py
epic/windows/count/count_reads.py
epic/windows/count/count_reads_in_windows.py
epic/windows/count/merge_chromosome_dfs.py
epic/windows/count/pandas_count_reads_in_windows.py
epic/windows/count/remove_out_of_bounds_bins.py
tests/__init__.py
tests/windows/__init__.py
tests/windows/test_count_reads_in_windows.py
tests/windows/test_merge_chromosome_dfs.py
tests/windows/test_pandas_and_gnu_window_counts_are_the_same.py
tests/windows/test_pandas_get_counts_in_all_windows.py