Metadata-Version: 2.1
Name: biomass
Version: 0.5.5
Summary: A Python Framework for Modeling and Analysis of Signaling Systems
Home-page: https://github.com/biomass-dev/biomass
Author: Hiroaki Imoto
Author-email: himoto@protein.osaka-u.ac.jp
Maintainer: Hiroaki Imoto
Maintainer-email: himoto@protein.osaka-u.ac.jp
License: Apache 2.0
Download-URL: https://github.com/biomass-dev/biomass/releases
Project-URL: Documentation, https://biomass-core.readthedocs.io/en/latest/
Project-URL: Source Code, https://github.com/biomass-dev/biomass
Project-URL: Bug Tracker, https://github.com/biomass-dev/biomass/issues
Description: # BioMASS
        
        [![PyPI version](https://img.shields.io/pypi/v/biomass.svg?logo=PyPI&logoColor=white)](https://pypi.python.org/pypi/biomass)
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        [![Imports: isort](https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336)](https://pycqa.github.io/isort/)
        [![Cancers Paper](https://img.shields.io/badge/DOI-10.3390%2Fcancers12102878-blue)](https://doi.org/10.3390/cancers12102878)
        
        _BioMASS_ is a computational framework for modeling and analysis of biological signaling systems in Python.
        
        - **Documentation:** https://biomass-core.readthedocs.io
        - **Source code:** https://github.com/biomass-dev/biomass
        - **Bug reports:** https://github.com/biomass-dev/biomass/issues
        
        It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization.
        
        ## Installation
        
        The BioMASS library is available at the [Python Package Index (PyPI)](https://pypi.org/project/biomass).
        
        ```shell
        $ pip install biomass
        ```
        
        BioMASS supports Python 3.7 or newer.
        
        ## Reference
        
        Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. _Cancers_ **12**, 2878 (2020). https://doi.org/10.3390/cancers12102878
        
        ## Author
        
        [Hiroaki Imoto](https://github.com/himoto)
        
        ## License
        
        [Apache License 2.0](https://github.com/biomass-dev/biomass/blob/master/LICENSE)
        
Keywords: systems,biology,modeling,optimization,sensitivity,analysis
Platform: UNKNOWN
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Python: >=3.7
Description-Content-Type: text/markdown
Provides-Extra: dev
Provides-Extra: docs
