MANIFEST.in
README.md
setup.py
bsbolt/__init__.py
bsbolt/__main__.py
bsbolt.egg-info/PKG-INFO
bsbolt.egg-info/SOURCES.txt
bsbolt.egg-info/dependency_links.txt
bsbolt.egg-info/entry_points.txt
bsbolt.egg-info/not-zip-safe
bsbolt.egg-info/requires.txt
bsbolt.egg-info/top_level.txt
bsbolt/Align/AlignReads.py
bsbolt/Align/__init__.py
bsbolt/CallMethylation/CallValues.py
bsbolt/CallMethylation/CallVector.py
bsbolt/CallMethylation/ProcessMethylationContigs.py
bsbolt/CallMethylation/__init__.py
bsbolt/Impute/__init__.py
bsbolt/Impute/kNN_Impute.py
bsbolt/Impute/Imputation/EuclideanDistance.py
bsbolt/Impute/Imputation/GenomeImputation.py
bsbolt/Impute/Imputation/GenomeImputationWindows.py
bsbolt/Impute/Imputation/__init__.py
bsbolt/Impute/Impute_Utils/ImputationFunctions.py
bsbolt/Impute/Impute_Utils/__init__.py
bsbolt/Impute/Validation/ImputationAssessment.py
bsbolt/Impute/Validation/MaskValues.py
bsbolt/Impute/Validation/__init__.py
bsbolt/Index/IndexOutput.py
bsbolt/Index/RRBSCutSites.py
bsbolt/Index/RRBSIndex.py
bsbolt/Index/WholeGenomeIndex.py
bsbolt/Index/__init__.py
bsbolt/Matrix/MatrixAggregator.py
bsbolt/Matrix/SiteAggregator.py
bsbolt/Matrix/SiteCounter.py
bsbolt/Matrix/__init__.py
bsbolt/Simulate/SetCyotsineMethylation.py
bsbolt/Simulate/SimulateMethylatedReads.py
bsbolt/Simulate/SimulationOutput.py
bsbolt/Simulate/StreamSim.py
bsbolt/Simulate/__init__.py
bsbolt/Utils/AlignmentEvaluation.py
bsbolt/Utils/AlnIterator.py
bsbolt/Utils/CGmapIterator.py
bsbolt/Utils/FastaIterator.py
bsbolt/Utils/FastqIterator.py
bsbolt/Utils/Launcher.py
bsbolt/Utils/MatrixIterator.py
bsbolt/Utils/Parser.py
bsbolt/Utils/ParserHelpMessages.py
bsbolt/Utils/UtilityFunctions.py
bsbolt/Utils/__init__.py
bsbolt/Variant/__init__.py