LICENSE
README.rst
setup.py
brie/__init__.py
brie/settings.py
brie/version.py
brie.egg-info/PKG-INFO
brie.egg-info/SOURCES.txt
brie.egg-info/dependency_links.txt
brie.egg-info/entry_points.txt
brie.egg-info/requires.txt
brie.egg-info/top_level.txt
brie/_cli/__init__.py
brie/_cli/_cli.py
brie/_cli/count.py
brie/_cli/download.py
brie/_cli/extract.py
brie/_cli/quant.py
brie/bin/__init__.py
brie/bin/brie_main.py
brie/bin/count.py
brie/bin/quant.py
brie/models/__init__.py
brie/models/base_model.py
brie/models/hypothesis_tests.py
brie/models/model_Beta.py
brie/models/model_TFProb.py
brie/models/model_TFProb_dev.py
brie/models/model_wrap.py
brie/models/simulator.py
brie/models/tools.py
brie/plot/LRtest_plot.py
brie/plot/__init__.py
brie/plot/base_plot.py
brie/utils/__init__.py
brie/utils/base_utils.py
brie/utils/bias_utils.py
brie/utils/count.py
brie/utils/count_droplet.py
brie/utils/fasta_utils.py
brie/utils/gtf_utils.py
brie/utils/io_utils.py
brie/utils/preprocessing.py
brie/utils/run_utils.py
brie/utils/sam_utils.py
brie/utils/tran_utils.py