LICENSE
README.md
pyproject.toml
image_matchmaker/__init__.py
image_matchmaker/cli.py
image_matchmaker.egg-info/PKG-INFO
image_matchmaker.egg-info/SOURCES.txt
image_matchmaker.egg-info/dependency_links.txt
image_matchmaker.egg-info/entry_points.txt
image_matchmaker.egg-info/requires.txt
image_matchmaker.egg-info/top_level.txt
image_matchmaker/configs/cpd_optimization_config.yaml
image_matchmaker/configs/register_config_test_aniso_rigid.yaml
image_matchmaker/configs/register_config_test_elastic.yaml
image_matchmaker/configs/register_config_test_rigid.yaml
image_matchmaker/configs/register_config_test_rigid_apply_transform.yaml
image_matchmaker/configs/elastix/ParameterMap_bspline_pointset_fine.txt
image_matchmaker/configs/elastix/ParameterMap_bspline_pointset_rough.txt
image_matchmaker/configs/elastix/ParameterMap_rigid_pointset.txt
image_matchmaker/configs/elastix/ParameterMap_segm_rigid_registration_corr.txt
image_matchmaker/cpd_parameter_tuning/__init__.py
image_matchmaker/cpd_parameter_tuning/add_landmarks.py
image_matchmaker/cpd_parameter_tuning/cpd_optimization.py
image_matchmaker/cpd_parameter_tuning/default_cpd_params.yaml
image_matchmaker/cpd_parameter_tuning/default_cpd_ranges.yaml
image_matchmaker/cpd_parameter_tuning/plot_overlays.py
image_matchmaker/cpd_parameter_tuning/suggest_cpd_ranges.py
image_matchmaker/data_processing/__init__.py
image_matchmaker/data_processing/deform_test_data.py
image_matchmaker/data_processing/mobie_export.py
image_matchmaker/data_processing/raw_to_n5.py
image_matchmaker/registration/__init__.py
image_matchmaker/registration/apply_transform.py
image_matchmaker/registration/cpd_nonrigid_registration.py
image_matchmaker/registration/elastix_deformable_pointset_registration.py
image_matchmaker/registration/match_pointclouds.py
image_matchmaker/registration/prealignment.py
image_matchmaker/registration/rigid_alignment_elastix.py
image_matchmaker/utils/__init__.py
image_matchmaker/utils/elastix_utils.py
image_matchmaker/utils/log_utils.py
image_matchmaker/utils/matching.py
image_matchmaker/utils/n5_utils.py
image_matchmaker/utils/pcd_utils.py
image_matchmaker/utils/test_utils.py
image_matchmaker/utils/transform_utils.py
image_matchmaker/utils/vis.py
image_matchmaker/workflows/__init__.py
image_matchmaker/workflows/apply_transform.smk
image_matchmaker/workflows/cpd_optimization.smk
image_matchmaker/workflows/registration.smk
image_matchmaker/workflows/workflow.py
tests/test_cpd_optimization.py
tests/test_pipeline.py