click<=8.2.0
cooler
duckdb
h5py
ibis-framework[duckdb]
loguru
more-itertools
natsort
numpy
pandas<=2.0.1
plotly<=5.10.0,>5.0.0
pyarrow<=9.0.0,>8.0.0
pybedtools
pyranges
pysam<=0.19.1,>0.15.0
pyyaml>=6.0
quarto
ray
seaborn
sh
snakemake
tqdm
trackhub
tracknado
ujson
xopen
xxhash

[experimental]
capcruncher-tools

[plotting]
coolbox

[stats]
pydeseq2
