CHANGELOG.md
CITATION.cff
LICENSE
README.md
pyproject.toml
src/phytclust/__init__.py
src/phytclust/__main__.py
src/phytclust/exceptions.py
src/phytclust/validation.py
src/phytclust/algo/__init__.py
src/phytclust/algo/bins.py
src/phytclust/algo/bootstrap_stability.py
src/phytclust/algo/core.py
src/phytclust/algo/dp.py
src/phytclust/algo/dp_utils.py
src/phytclust/algo/scoring.py
src/phytclust/algo/dp/__init__.py
src/phytclust/algo/dp/costs.py
src/phytclust/algo/dp/merge.py
src/phytclust/algo/dp/polytomy.py
src/phytclust/algo/dp/table.py
src/phytclust/algo/dp/tied_partitions.py
src/phytclust/assets/ascii_logo.txt
src/phytclust/assets/phytclust_logo_colour.png
src/phytclust/assets/phytclust_logo_colour_text_only.png
src/phytclust/assets/phytclust_text_only_colour.svg
src/phytclust/assets/small_logo.png
src/phytclust/cli/__init__.py
src/phytclust/cli/__main__.py
src/phytclust/cli/app.py
src/phytclust/config/README.md
src/phytclust/config/__init__.py
src/phytclust/config/outlier.py
src/phytclust/config/peak.py
src/phytclust/config/runtime.py
src/phytclust/gui/README.md
src/phytclust/gui/api.py
src/phytclust/gui/launch.py
src/phytclust/gui/static/ICCB_logo.png
src/phytclust/gui/static/app.css
src/phytclust/gui/static/bitbucket_link.png
src/phytclust/gui/static/phytclust_logo_colour.png
src/phytclust/gui/static/css/animations.css
src/phytclust/gui/static/css/appearance.css
src/phytclust/gui/static/css/base.css
src/phytclust/gui/static/css/footer.css
src/phytclust/gui/static/css/help.css
src/phytclust/gui/static/css/main.css
src/phytclust/gui/static/css/modals.css
src/phytclust/gui/static/css/nav.css
src/phytclust/gui/static/css/responsive.css
src/phytclust/gui/static/css/scores.css
src/phytclust/gui/static/css/sidebar.css
src/phytclust/gui/static/css/toast.css
src/phytclust/gui/static/css/tree.css
src/phytclust/gui/static/css/viz.css
src/phytclust/gui/static/js/api.js
src/phytclust/gui/static/js/colors.js
src/phytclust/gui/static/js/dom.js
src/phytclust/gui/static/js/main.js
src/phytclust/gui/static/js/session.js
src/phytclust/gui/static/js/state.js
src/phytclust/gui/static/js/utils.js
src/phytclust/gui/static/js/tree/compare.js
src/phytclust/gui/static/js/tree/draw.js
src/phytclust/gui/static/js/tree/layout.js
src/phytclust/gui/static/js/tree/nodes.js
src/phytclust/gui/static/js/ui/appearance_panel.js
src/phytclust/gui/static/js/ui/collapsibles.js
src/phytclust/gui/static/js/ui/export.js
src/phytclust/gui/static/js/ui/file.js
src/phytclust/gui/static/js/ui/status.js
src/phytclust/gui/static/js/ui/tabs.js
src/phytclust/gui/static/js/ui/toast.js
src/phytclust/gui/static/js/views/cluster_editor.js
src/phytclust/gui/static/js/views/compare.js
src/phytclust/gui/static/js/views/optimal_k.js
src/phytclust/gui/static/js/views/scores_panel.js
src/phytclust/gui/static/vendor/d3.v7.min.js
src/phytclust/gui/templates/index.html
src/phytclust/gui/templates/partials/_context_menu.html
src/phytclust/gui/templates/partials/_footer.html
src/phytclust/gui/templates/partials/_help_sidebar.html
src/phytclust/gui/templates/partials/_main_content.html
src/phytclust/gui/templates/partials/_modal_about.html
src/phytclust/gui/templates/partials/_modal_cluster_editor.html
src/phytclust/gui/templates/partials/_modal_shortcuts.html
src/phytclust/gui/templates/partials/_nav.html
src/phytclust/gui/templates/partials/_sidebar.html
src/phytclust/io/__init__.py
src/phytclust/io/save.py
src/phytclust/metrics/__init__.py
src/phytclust/metrics/indices.py
src/phytclust/selection/__init__.py
src/phytclust/selection/representatives.py
src/phytclust/utils/__init__.py
src/phytclust/utils/traversal.py
src/phytclust/utils/tree.py
src/phytclust/viz/__init__.py
src/phytclust/viz/cluster.py
src/phytclust/viz/palette.py
src/phytclust/viz/plots.py
src/phytclust/viz/scores.py