.gitignore
.readthedocs.yml
LICENSE
MANIFEST.in
README.rst
environments_and_versions.txt
reconstruct_bdtnp_with_markers.py
reconstruct_corti.ipynb
reconstruct_drosophila_embryo_tutorial.ipynb
reconstruct_intestine_denovo.py
reconstruct_osteosarcoma.ipynb
reconstruct_tissue.py
requirements.txt
setup.py
docs/Makefile
docs/conf.py
docs/index.rst
docs/installation.rst
docs/make.bat
docs/references.rst
docs/release_notes.rst
docs/requirements.txt
docs/tutorials.rst
docs/_static/css/custom.css
novosparc/__init__.py
novosparc.egg-info/PKG-INFO
novosparc.egg-info/SOURCES.txt
novosparc.egg-info/dependency_links.txt
novosparc.egg-info/requires.txt
novosparc.egg-info/top_level.txt
novosparc/analysis/__init__.py
novosparc/analysis/_analysis.py
novosparc/common/__init__.py
novosparc/common/_tissue.py
novosparc/datasets/tissue_example.png
novosparc/datasets/bdtnp/dge.txt
novosparc/datasets/bdtnp/geometry.txt
novosparc/datasets/corti/corti_expression.h5
novosparc/datasets/corti/corti_expression.xlsx
novosparc/datasets/drosophila_scRNAseq/dge_normalized.txt
novosparc/datasets/drosophila_scRNAseq/high_var_genes.txt
novosparc/datasets/intestine/dge.tsv.gz
novosparc/datasets/intestine/zones.tsv
novosparc/datasets/osteosarcoma/Xiaowei Zhuang - MERFISH.pdf
novosparc/datasets/osteosarcoma/checking_batches.ipynb
novosparc/datasets/osteosarcoma/data_dge
novosparc/datasets/osteosarcoma/data_geometry.xlsx
novosparc/datasets/osteosarcoma/data_to_input.py
novosparc/datasets/osteosarcoma/dge_1.txt
novosparc/datasets/osteosarcoma/dge_2.txt
novosparc/datasets/osteosarcoma/dge_3.txt
novosparc/datasets/osteosarcoma/geometry_1.txt
novosparc/datasets/osteosarcoma/geometry_2.txt
novosparc/datasets/osteosarcoma/geometry_3.txt
novosparc/geometry/__init__.py
novosparc/geometry/_geometry.py
novosparc/io/__init__.py
novosparc/io/_data_loading.py
novosparc/io/_saving.py
novosparc/plotting/__init__.py
novosparc/plotting/_plotting.py
novosparc/preprocessing/__init__.py
novosparc/preprocessing/_preprocessing.py
novosparc/reconstruction/_GWadjusted.py
novosparc/reconstruction/__init__.py
novosparc/reconstruction/_reconstruction.py
output_bdtnp/3039_cells_3039_locations.png
output_bdtnp/3039_cells_3039_locations_spatially_important_.png
output_bdtnp/84_genes_3039_locations_morans.txt
output_bdtnp/results.txt
output_bdtnp/sdge_3039_cells_3039_locations.txt
output_intestine/histogram_intestine.png
output_intestine/sdge_1383_cells_7_locations.txt
output_intestine/spatial_expression_intestine.png
output_osteosarcoma/gois_pred_nmarkers.html
output_osteosarcoma/gois_pred_using_PKM.html
output_osteosarcoma/gois_true.html
output_osteosarcoma/reconstruction_corr_nmarkers.html