CODE_OF_CONDUCT.md
MANIFEST.in
README.rst
__init__.py
eden.ini
readthedocs.yml
requirements.txt
setup.py
to_do_list
.github/workflows/main.yml
autocti/__init__.py
autocti/exc.py
autocti/fixtures.py
autocti/mock.py
autocti/charge_injection/__init__.py
autocti/charge_injection/fit.py
autocti/charge_injection/hyper.py
autocti/charge_injection/layout.py
autocti/charge_injection/master.py
autocti/charge_injection/ou_sim_ci.py
autocti/charge_injection/imaging/__init__.py
autocti/charge_injection/imaging/imaging.py
autocti/charge_injection/imaging/settings.py
autocti/charge_injection/imaging/simulator.py
autocti/charge_injection/mock/__init__.py
autocti/charge_injection/mock/mock_result.py
autocti/charge_injection/model/__init__.py
autocti/charge_injection/model/analysis.py
autocti/charge_injection/model/result.py
autocti/charge_injection/model/visualizer.py
autocti/charge_injection/plot/__init__.py
autocti/charge_injection/plot/fit_ci_plotters.py
autocti/charge_injection/plot/imaging_ci_plotters.py
autocti/clocker/__init__.py
autocti/clocker/abstract.py
autocti/clocker/one_d.py
autocti/clocker/two_d.py
autocti/config/general.ini
autocti/config/notation/label.ini
autocti/config/notation/label_format.ini
autocti/config/priors/ccd.json
autocti/config/priors/hyper.json
autocti/config/priors/traps.json
autocti/config/visualize/doc_general
autocti/config/visualize/general.ini
autocti/config/visualize/plots.ini
autocti/cosmics/__init__.py
autocti/cosmics/cosmics.py
autocti/extract/__init__.py
autocti/extract/one_d/__init__.py
autocti/extract/one_d/abstract.py
autocti/extract/one_d/eper.py
autocti/extract/one_d/fpr.py
autocti/extract/one_d/master.py
autocti/extract/two_d/__init__.py
autocti/extract/two_d/abstract.py
autocti/extract/two_d/master.py
autocti/extract/two_d/parallel_calibration.py
autocti/extract/two_d/parallel_eper.py
autocti/extract/two_d/parallel_fpr.py
autocti/extract/two_d/serial_calibration.py
autocti/extract/two_d/serial_eper.py
autocti/extract/two_d/serial_fpr.py
autocti/layout/__init__.py
autocti/layout/one_d.py
autocti/layout/two_d.py
autocti/line/__init__.py
autocti/line/dataset.py
autocti/line/fit.py
autocti/line/model/__init__.py
autocti/line/model/analysis.py
autocti/line/model/result.py
autocti/line/model/visualizer.py
autocti/line/plot/__init__.py
autocti/line/plot/dataset_line_plotters.py
autocti/line/plot/fit_line_plotters.py
autocti/mask/__init__.py
autocti/mask/mask_1d.py
autocti/mask/mask_2d.py
autocti/model/__init__.py
autocti/model/model_util.py
autocti/model/result.py
autocti/model/settings.py
autocti/model/visualizer.py
autocti/plot/__init__.py
autocti/plot/abstract_plotters.py
autocti/plot/get_visuals.py
autocti/util/__init__.py
docs/conf.py
docs/index.rst
docs/requirements.txt
docs/overview/overview_1_what_is_cti.rst
docs/overview/overview_2_parallel_and_serial.rst
docs/overview/overview_3_cti_features.rst
docs/overview/overview_4_charge_injection_data.rst
docs/overview/overview_5_fitting.rst
docs/overview/overview_6_cti_calibration.rst
docs/overview/images/ccd.gif
docs/overview/images/cti.gif
docs/overview/images/overview_1/array_1d.png
docs/overview/images/overview_1/array_1d_with_cti.png
docs/overview/images/overview_2/array_2d.png
docs/overview/images/overview_2/array_2d_cti_corrected.png
docs/overview/images/overview_2/array_2d_parallel_cti.png
docs/overview/images/overview_2/array_2d_parallel_serial_cti.png
docs/overview/images/overview_2/array_2d_serial_cti.png
test_autocti/__init__.py
test_autocti/conftest.py
test_autocti/analysis/__init__.py
test_autocti/analysis/test_analysis.py
test_autocti/analysis/test_model_util.py
test_autocti/analysis/test_result.py
test_autocti/analysis/test_settings.py
test_autocti/analysis/test_visualizer.py
test_autocti/charge_injection/__init__.py
test_autocti/charge_injection/test_fit_ci.py
test_autocti/charge_injection/test_hyper_ci.py
test_autocti/charge_injection/test_imaging_ci.py
test_autocti/charge_injection/test_layout_ci.py
test_autocti/charge_injection/test_master.py
test_autocti/charge_injection/test_ou_sim_ci.py
test_autocti/charge_injection/imaging/__init__.py
test_autocti/charge_injection/imaging/test_imaging_ci.py
test_autocti/charge_injection/imaging/test_settings_ci.py
test_autocti/charge_injection/imaging/test_simulator_ci.py
test_autocti/charge_injection/imaging/files/.gitignore
test_autocti/charge_injection/model/test_analysis_ci.py
test_autocti/charge_injection/model/test_result_ci.py
test_autocti/charge_injection/model/test_visualizer_ci.py
test_autocti/charge_injection/plot/test_fit_ci_plotters.py
test_autocti/charge_injection/plot/test_imaging_ci_plotters.py
test_autocti/clocker/__init__.py
test_autocti/clocker/test_one_d.py
test_autocti/clocker/test_two_d.py
test_autocti/config/general.ini
test_autocti/config/grids/interpolate.ini
test_autocti/config/grids/radial_minimum.ini
test_autocti/config/non_linear/GridSearch.ini
test_autocti/config/non_linear/doc_non_linear
test_autocti/config/non_linear/mcmc/Emcee.ini
test_autocti/config/non_linear/mock/MockOptimizer.ini
test_autocti/config/non_linear/mock/MockSearch.ini
test_autocti/config/non_linear/nest/DynestyDynamic.ini
test_autocti/config/non_linear/nest/DynestyStatic.ini
test_autocti/config/non_linear/optimize/DownhillSimplex.ini
test_autocti/config/notation/label.ini
test_autocti/config/notation/label_format.ini
test_autocti/config/priors/ccd.json
test_autocti/config/priors/hyper.json
test_autocti/config/priors/traps.json
test_autocti/config/visualize/doc_general
test_autocti/config/visualize/plots.ini
test_autocti/extract/__init__.py
test_autocti/extract/one_d/__init__.py
test_autocti/extract/one_d/conftest.py
test_autocti/extract/one_d/test_abstract.py
test_autocti/extract/one_d/test_eper.py
test_autocti/extract/one_d/test_fpr.py
test_autocti/extract/one_d/test_master.py
test_autocti/extract/two_d/__init__.py
test_autocti/extract/two_d/conftest.py
test_autocti/extract/two_d/test_abstract.py
test_autocti/extract/two_d/test_master.py
test_autocti/extract/two_d/test_parallel_calibration.py
test_autocti/extract/two_d/test_parallel_eper.py
test_autocti/extract/two_d/test_parallel_fpr.py
test_autocti/extract/two_d/test_serial_calibration.py
test_autocti/extract/two_d/test_serial_eper.py
test_autocti/extract/two_d/test_serial_fpr.py
test_autocti/layout/__init__.py
test_autocti/layout/test_one_d.py
test_autocti/layout/test_two_d.py
test_autocti/line/test_dataset.py
test_autocti/line/test_fit.py
test_autocti/line/model/test_analysis_line.py
test_autocti/line/model/test_visualizer_line.py
test_autocti/line/plot/test_dataset_line_plotters.py
test_autocti/line/plot/test_fit_line_plotters.py
test_autocti/mask/__init__.py
test_autocti/mask/test_mask_1d.py
test_autocti/mask/test_mask_2d.py
test_autocti/mask/files/array/3x3_ones.fits
test_autocti/mask/files/array/output_test/mask.fits
test_autocti/model/__init__.py
test_autocti/model/test_model_util.py
test_autocti/plot/__init__.py
test_autocti/plot/files/plotter/general.ini
test_autocti/plot/files/plotter/visualize/doc_general
test_autocti/plot/files/plotter/visualize/general.ini
test_autocti/plot/files/plotter/visualize/plots.ini