LICENSE
MANIFEST.in
README.md
setup.py
rna_map/__init__.py
rna_map/bit_vector.py
rna_map/cli.py
rna_map/cli_opts.py
rna_map/exception.py
rna_map/external_cmd.py
rna_map/logger.py
rna_map/mapping.py
rna_map/mutation_histogram.py
rna_map/parameters.py
rna_map/run.py
rna_map/sam.py
rna_map/settings.py
rna_map/util.py
rna_map.egg-info/PKG-INFO
rna_map.egg-info/SOURCES.txt
rna_map.egg-info/dependency_links.txt
rna_map.egg-info/entry_points.txt
rna_map.egg-info/not-zip-safe
rna_map.egg-info/requires.txt
rna_map.egg-info/top_level.txt
rna_map/resources/bowtie2_args.csv
rna_map/resources/cli_opts.yml
rna_map/resources/default.yml
rna_map/resources/logo.txt
rna_map/resources/params_schema.json
rna_map/resources/phred_ascii.txt
rna_map/resources/picard.jar
test/test_bit_vector.py
test/test_cli.py
test/test_external_cmd.py
test/test_histogram.py
test/test_logging.py
test/test_mapping.py
test/test_mutation_histogram.py
test/test_parameters.py
test/test_run.py
test/test_sam.py