.gitignore
.readthedocs.yaml
LICENSE
README.md
pyproject.toml
setup.py
uv.lock
.github/workflows/lint.yml
.github/workflows/publish.yml
.github/workflows/test.yml
data/SHA256SUMS
data/paquid.csv
data/pbc2.csv
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/source/base_hazards.rst
docs/source/conf.py
docs/source/fitting-test.ipynb
docs/source/functions.rst
docs/source/getting-started.rst
docs/source/index.rst
docs/source/model-guide.rst
docs/source/model.rst
docs/source/modules.rst
docs/source/paquid-test.ipynb
docs/source/types.rst
docs/source/utils.rst
docs/source/_static/custom.css
docs/source/_static/jmstate-logo.svg
docs/source/_templates/autosummary/class.rst
figures/paquid-accuracy.pdf
figures/paquid-diagnostics.pdf
figures/paquid-optimization.pdf
figures/pbc2-accuracy.pdf
figures/pbc2-diagnostics.pdf
figures/pbc2-jmstate-diagnostics.pdf
figures/pbc2-jmstate-jmbayes2-comparison.pdf
figures/pbc2-jmstate-optimization.pdf
figures/pbc2-metrics.pdf
figures/pbc2-optimization.pdf
figures/simulated-diagnostics.pdf
figures/simulated-optimization.pdf
figures/simulated-sample.pdf
figures/stochastic-optimization.pdf
jmstate/__init__.py
jmstate/py.typed
jmstate.egg-info/PKG-INFO
jmstate.egg-info/SOURCES.txt
jmstate.egg-info/dependency_links.txt
jmstate.egg-info/requires.txt
jmstate.egg-info/scm_file_list.json
jmstate.egg-info/scm_version.json
jmstate.egg-info/top_level.txt
jmstate/functions/__init__.py
jmstate/functions/base_hazards.py
jmstate/model/__init__.py
jmstate/model/_base.py
jmstate/model/_fit.py
jmstate/model/_hazard.py
jmstate/model/_longitudinal.py
jmstate/model/_predict.py
jmstate/model/_prior.py
jmstate/model/_sampler.py
jmstate/types/__init__.py
jmstate/types/_data.py
jmstate/types/_defs.py
jmstate/types/_parameters.py
jmstate/utils/__init__.py
jmstate/utils/_checks.py
jmstate/utils/_dtype.py
jmstate/utils/_linalg.py
jmstate/utils/_plot.py
jmstate/utils/_stats.py
jmstate/utils/_surv.py
jmstate/utils/_surv_ext.cpp
results/convergence-results.csv
results/pbc2-cv-folds.csv
results/pbc2-fold-metrics.csv
results/pbc2-jmbayes2-fit-stats.csv
results/pbc2-jmbayes2-metrics-python.csv
results/pbc2-jmbayes2-parameters.csv
results/pbc2-jmbayes2-predictions.csv
results/pbc2-jmbayes2-timings.csv
results/pbc2-jmstate-covariance.csv
results/pbc2-jmstate-jmbayes2-comparison.csv
results/pbc2-jmstate-jmbayes2-parameters.csv
results/pbc2-jmstate-parameters.csv
results/pbc2-metrics.csv
results/pbc2-prediction-grid.csv
results/pbc2-predictions.csv
results/selection-results.csv
scripts/fitting-test.ipynb
scripts/paquid-test.ipynb
scripts/pbc2-jmbayes2.R
scripts/pbc2-test.ipynb
scripts/requirements.txt
scripts/utils/simulation.py
scripts/utils/tables.py
scripts/utils/utils.py
tests/__init__.py
tests/_helpers.py
tests/test_data.py
tests/test_device.py
tests/test_fit.py
tests/test_hazards.py
tests/test_linalg.py
tests/test_parameters.py
tests/test_plot.py
tests/test_predict.py
tests/test_sampler.py
tests/test_stats.py