.flake8
.gitignore
.readthedocs.yaml
CHANGELOG.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
README.md
pyproject.toml
setup.py
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/user-story.md
.github/workflows/publish_dev.yml
.github/workflows/run_dev_tests.yml
.github/workflows/run_main_tests.yml
.github/workflows/tag_and_publish_main.yml
.github/workflows/update_docs.yml
docs/Makefile
docs/make.bat
docs/base/core/acquisition.md
docs/base/core/data_description.md
docs/base/core/instrument.md
docs/base/core/metadata.md
docs/base/core/model.md
docs/base/core/procedures.md
docs/base/core/processing.md
docs/base/core/quality_control.md
docs/base/core/subject.md
docs/source/acquisition.md
docs/source/components.rst
docs/source/conf.py
docs/source/coordinate_systems.md
docs/source/data_description.md
docs/source/general.md
docs/source/index.rst
docs/source/instrument.md
docs/source/metadata.md
docs/source/model.md
docs/source/procedures.md
docs/source/processing.md
docs/source/quality_control.md
docs/source/registries.rst
docs/source/related_standards.md
docs/source/subject.md
docs/source/_static/bregma_and_lambda2.png
docs/source/_static/coordinates2.png
docs/source/_static/custom.css
docs/source/_static/dark-logo.svg
docs/source/_static/favicon.ico
docs/source/_static/light-logo.svg
docs/source/_static/session_image_1.png
docs/source/_static/session_image_2.png
docs/source/_static/session_image_3.png
docs/source/aind_data_schema_models/atlas.md
docs/source/aind_data_schema_models/brain_atlas.md
docs/source/aind_data_schema_models/coordinates.md
docs/source/aind_data_schema_models/data_name_patterns.md
docs/source/aind_data_schema_models/devices.md
docs/source/aind_data_schema_models/external.md
docs/source/aind_data_schema_models/harp_types.md
docs/source/aind_data_schema_models/licenses.md
docs/source/aind_data_schema_models/modalities.md
docs/source/aind_data_schema_models/organizations.md
docs/source/aind_data_schema_models/pid_names.md
docs/source/aind_data_schema_models/process_names.md
docs/source/aind_data_schema_models/reagent.md
docs/source/aind_data_schema_models/registries.md
docs/source/aind_data_schema_models/species.md
docs/source/aind_data_schema_models/specimen_procedure_types.md
docs/source/aind_data_schema_models/stimulus_modality.md
docs/source/aind_data_schema_models/system_architecture.md
docs/source/aind_data_schema_models/units.md
docs/source/components/configs.md
docs/source/components/connections.md
docs/source/components/coordinates.md
docs/source/components/devices.md
docs/source/components/identifiers.md
docs/source/components/injection_procedures.md
docs/source/components/measurements.md
docs/source/components/reagent.md
docs/source/components/specimen_procedures.md
docs/source/components/stimulus.md
docs/source/components/subject_procedures.md
docs/source/components/subjects.md
docs/source/components/surgery_procedures.md
docs/source/example_workflow/example_workflow.md
docs/source/example_workflow/example_workflow.py
docs/source/example_workflow/example_workflow.xlsx
examples/__init__.py
examples/aibs_smartspim_instrument.py
examples/aibs_smartspim_procedures.py
examples/aind_smartspim_instrument.py
examples/bergamo_ophys_acquisition.py
examples/data_description.py
examples/ephys_acquisition.py
examples/ephys_instrument.py
examples/exaspim_acquisition.py
examples/exaspim_instrument.py
examples/exaspim_quality_control.py
examples/fip_behavior_instrument.py
examples/fip_ophys_acquisition.py
examples/fip_ophys_instrument.py
examples/model.py
examples/mri_acquisition.py
examples/multiplane_ophys_acquisition.py
examples/multiplane_ophys_instrument.py
examples/ophys_acquisition.py
examples/ophys_procedures.py
examples/procedures.py
examples/processing.py
examples/quality_control.py
examples/subject.py
schemas/acquisition_schema.json
schemas/data_description_schema.json
schemas/instrument_schema.json
schemas/metadata_schema.json
schemas/model_schema.json
schemas/procedures_schema.json
schemas/processing_schema.json
schemas/quality_control_schema.json
schemas/subject_schema.json
src/aind_data_schema/__init__.py
src/aind_data_schema/base.py
src/aind_data_schema.egg-info/PKG-INFO
src/aind_data_schema.egg-info/SOURCES.txt
src/aind_data_schema.egg-info/dependency_links.txt
src/aind_data_schema.egg-info/requires.txt
src/aind_data_schema.egg-info/top_level.txt
src/aind_data_schema/components/__init__.py
src/aind_data_schema/components/configs.py
src/aind_data_schema/components/connections.py
src/aind_data_schema/components/coordinates.py
src/aind_data_schema/components/devices.py
src/aind_data_schema/components/identifiers.py
src/aind_data_schema/components/injection_procedures.py
src/aind_data_schema/components/measurements.py
src/aind_data_schema/components/reagent.py
src/aind_data_schema/components/specimen_procedures.py
src/aind_data_schema/components/stimulus.py
src/aind_data_schema/components/subject_procedures.py
src/aind_data_schema/components/subjects.py
src/aind_data_schema/components/surgery_procedures.py
src/aind_data_schema/components/wrappers.py
src/aind_data_schema/core/__init__.py
src/aind_data_schema/core/acquisition.py
src/aind_data_schema/core/data_description.py
src/aind_data_schema/core/instrument.py
src/aind_data_schema/core/metadata.py
src/aind_data_schema/core/model.py
src/aind_data_schema/core/procedures.py
src/aind_data_schema/core/processing.py
src/aind_data_schema/core/quality_control.py
src/aind_data_schema/core/subject.py
src/aind_data_schema/utils/__init__.py
src/aind_data_schema/utils/compatibility_check.py
src/aind_data_schema/utils/examples_generator.py
src/aind_data_schema/utils/exceptions.py
src/aind_data_schema/utils/json_writer.py
src/aind_data_schema/utils/merge.py
src/aind_data_schema/utils/schema_version_bump.py
src/aind_data_schema/utils/validators.py
src/aind_data_schema/utils/docs/doc_generator.py
src/aind_data_schema/utils/docs/model_generator.py
src/aind_data_schema/utils/docs/registries_generator.py
src/aind_data_schema/utils/docs/utils.py
tests/__init__.py
tests/test_acquisition.py
tests/test_acquisition_configs.py
tests/test_aind_generic.py
tests/test_base.py
tests/test_bump_schema_versions.py
tests/test_compatibility_check.py
tests/test_composability_merge.py
tests/test_configs.py
tests/test_coordinates.py
tests/test_data_description.py
tests/test_device.py
tests/test_examples.py
tests/test_examples_generator.py
tests/test_identifiers.py
tests/test_imaging.py
tests/test_inst_acq_compatibility.py
tests/test_instrument.py
tests/test_json_writer.py
tests/test_measurements.py
tests/test_metadata.py
tests/test_model.py
tests/test_procedures.py
tests/test_processing.py
tests/test_quality_control.py
tests/test_stimulus.py
tests/test_subject.py
tests/test_subjects.py
tests/test_utils_merge.py
tests/test_utils_validators.py
tests/test_wrappers.py