pathway_subtyping/__init__.py,sha256=0YHmJSM0jbnDNT6RikfP8vvIqdfZV2gcEJfK0TsGibI,12182
pathway_subtyping/__main__.py,sha256=j2Mnic6L3JxRwK9SWBO-gbcIqbCRWbu6uZr5Jkr303M,128
pathway_subtyping/ancestry.py,sha256=GQ8qcsUaICePJglD_J2Rwt81nL38h4bzYD1OSIpytTM,24240
pathway_subtyping/batch_correction.py,sha256=x9TsSq1dj3E8nc-DehNR5IduMKmI38IGxBqSwoRu6TQ,21812
pathway_subtyping/benchmark.py,sha256=Wcw_-0uHGFFEAAm3iUKfStRu7cBeOHqSYFaN-KcJ04E,18997
pathway_subtyping/characterization.py,sha256=zwdMGSH_4XakTNEpZRZ1XSjPLHuBHUuyD1YpPHx-C8E,32695
pathway_subtyping/cli.py,sha256=XnQ2KtFlKaqH9XVf80dR0Eg8zZCTWqdn5U3GhpdHKCA,2800
pathway_subtyping/clustering.py,sha256=l8bsIi9-I8Jkisnw0AwOiojmEIrHIzdhb6-LgGcy0GA,16542
pathway_subtyping/config.py,sha256=5iRuqScBGoqjL31gSowILYJ3xdK_L7dRQnJ6XV3jq-s,20993
pathway_subtyping/cross_cohort.py,sha256=1ZJSRbH0E3wnx2o9pONn_8rvNnO9Qec4bdvm9H8Tx50,16958
pathway_subtyping/cross_modal_validation.py,sha256=BXcXyWyUgTZnMg2VU9oTSsC5jBvUgqvIBuuBFKROz68,20948
pathway_subtyping/data_quality.py,sha256=EWvQ0_sgx85VlCxSDmHzkWmVjf1dCKOSk1kKYABsmZA,22817
pathway_subtyping/deconvolution.py,sha256=3gjxCkZIP_8UXlhYTfK4RPwaHi6cU_WN-5-MxAn8y3E,19069
pathway_subtyping/expression.py,sha256=LCWoPhdzVnxuWShXOivBVkPZcdkIX8IUukw5CAQnNjY,24646
pathway_subtyping/multi_omic.py,sha256=veeilpcOU1oKFFmniP10T0m6-GihN3xqEHwXYp5NZrU,29815
pathway_subtyping/network_propagation.py,sha256=_8GRI3Y83MmyBU_5aDznfDEnLZY6f44t5XONL0tNf5M,18071
pathway_subtyping/pipeline.py,sha256=qTbcQ3csYamOKBX9fD0dNqE5cxDZUXoZ3vn9yXu7vc4,65478
pathway_subtyping/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
pathway_subtyping/sensitivity.py,sha256=tlf6ESX22kZMePErYCUdndzBrSht1vnGGrD6SqXp7yM,17851
pathway_subtyping/signaling_databases.py,sha256=rML_vmBVX9BgsfJSeI7tW7UaskuhLF_DBif1PEsZpm8,24662
pathway_subtyping/simulation.py,sha256=uoRyEXq0jNDSNDfQx6tl8r9TjxLpyvVZdtb_s4Md8FI,31252
pathway_subtyping/single_cell.py,sha256=xmlnrjD9f2S1gKGT-3qHVza8pIz187wVoDJioe5DjFE,29064
pathway_subtyping/statistical_rigor.py,sha256=dOlgIVOpDkT9YGddT7g7gQMvOrym5THTdANRNFIFztU,28148
pathway_subtyping/threshold_calibration.py,sha256=jUz59uURnnsk4tNmpq8m4M7L_I1VTApbksPekpInEHk,22774
pathway_subtyping/validation.py,sha256=C8kt-FnQY83fMjpH0yymqKzhBfSNLd1yVVn4fllQ0WE,22509
pathway_subtyping/validation_datasets.py,sha256=_Nc64_m1S7BAH9nUni8ZY9VSZnYus478GWe4Vki4vqk,43351
pathway_subtyping/variant_qc.py,sha256=E4_vna4qDmxdG1St2XMQdMgnvSGBnPi7UBzRkXyvR40,14736
pathway_subtyping/visualization.py,sha256=kudV6dbk3vYE3Qtcx1-SOtE3KwUUE2_6wFqXwjPbGMw,31452
pathway_subtyping/active/__init__.py,sha256=Vb-i_ELso-h4U5r3vAtkVdOdNS5SvGN1Q7CqnINddGs,738
pathway_subtyping/active/selector.py,sha256=BKfSfYyp9qGkx1LlrdFxLClzco2K82EalMU5r6qTZUE,9258
pathway_subtyping/autism/__init__.py,sha256=Xog1a2k3zAeuKdyRzpKbDZn4XJfW6PrwDqA_pkPAM0k,1277
pathway_subtyping/autism/neurosymbolic/__init__.py,sha256=Y_qFDeULE3DLMMFA72Ajvbyv7_DRy3XwgFih6ncNi28,80
pathway_subtyping/autism/neurosymbolic/combiner.py,sha256=PfWc_NaPWssU2qsu0RTJ9Wzgglo2YVVrEAMKOamyPGE,4919
pathway_subtyping/autism/rules/__init__.py,sha256=AZwn_HmpREkIgCDWDbFqtRQWSb2zsLKV8azWpdE6LV8,67
pathway_subtyping/autism/rules/biological_rules.py,sha256=9pW63gokK2YhsN6tU3Df5og5PIjGlGVCfYUUgjkXnfQ,12097
pathway_subtyping/autism/rules/conditions.py,sha256=3giBfL5SWgNgySP1Q-LRT-jjUeEhct7DkZEFUWYQHtM,11804
pathway_subtyping/autism/rules/engine.py,sha256=dk3qbkgkgKkRTeiaErpkMqS7HGSnIdb5xjvW0Vnwrmc,11208
pathway_subtyping/autism/rules/explanation.py,sha256=p-79CbZv0T6iJb6hV24hFyOaweU2BG-C4Zfw8loBIfk,7653
pathway_subtyping/autism/therapeutic/__init__.py,sha256=Eu_IYqMadPqJpq7TBLTMkemAxRxeAzbAJtwr1LYSl14,80
pathway_subtyping/autism/therapeutic/drug_mapping.py,sha256=pGBX4GVy8lasDd6G4g1XPtThosw43roY4TVxZIo83fQ,6508
pathway_subtyping/autism/therapeutic/evidence.py,sha256=7LpY1Gwefi6sgazakBK2qmejSrZ5Q71ANCI9QxXkKEw,8753
pathway_subtyping/autism/therapeutic/ranking.py,sha256=9NAU1-xdOpYlwD0eQMqKVLsVT70Qv0D3YbyqdbbkhG4,9233
pathway_subtyping/causal/__init__.py,sha256=1vG8GnSasTYGb8HrQPopS9eEpgwVogu7jaFhdDhDk0I,1041
pathway_subtyping/causal/invariant.py,sha256=oKqepQDJ-bNdTGSiQDSerHJlNwW5SS8yUigbwwCT2ec,11441
pathway_subtyping/data/pathways/autism_pathways.gmt,sha256=L45j93XYMFGuUkfEQsPFOi2wrEPQviNn074EO_ixdo4,2161
pathway_subtyping/data/pathways/bipolar_pathways.gmt,sha256=gMVJ80w7kHxVmt5yiCeonbL3VZzp_2m06uynTDz8t_o,2701
pathway_subtyping/data/pathways/epilepsy_pathways.gmt,sha256=o5f51dauyqs2_8-uo6VdW7K7EpdjCchUk_wq_8PovOU,2112
pathway_subtyping/data/pathways/intellectual_disability_pathways.gmt,sha256=8qBxHaR03bBwA2TB16O5AkXBySLZfKmYP5htdU8ISJE,3328
pathway_subtyping/data/pathways/parkinsons_pathways.gmt,sha256=mtGobBy1ULuEJKnU0OJ6GN5bK0sJS3Y-HVDz0-7ig_Q,2546
pathway_subtyping/data/pathways/schizophrenia_pathways.gmt,sha256=AH5hrpr3bFVVpjMRk6I9_tj62O6WZjbnUks6N0qeEvQ,2385
pathway_subtyping/embed/__init__.py,sha256=r0u4WGWdhp8C7bwqEacfS9iANhY6FrBwZE6Jr-0z8ZQ,1394
pathway_subtyping/embed/base.py,sha256=W6zlmJwP4RbEVhsDK4YukDuzykwSlN8sAiCDmi4U36M,2437
pathway_subtyping/embed/cache.py,sha256=kqP3voLURgAGgLwffL7CPKNuqn425to0uSefv2jglAc,5728
pathway_subtyping/embed/nicheformer.py,sha256=YwyAOgs8mOlt0SjyWc4tU5nAmGu-MOAng0l4stJsCgc,8133
pathway_subtyping/embed/scgpt.py,sha256=ClWDB5D78esVzakJTewH1DQJ5hNCYBc5uz5BJ9FkZuE,6827
pathway_subtyping/genesets/__init__.py,sha256=214OdXQ__AFiGlh2ZvDUxdcwmALqiZtP-wmvMTNTOn0,866
pathway_subtyping/genesets/regulatory.py,sha256=Jg89JNyfmcMCwDd7UC_DAdFQEm_hJVRdBM4dtoToDw0,11042
pathway_subtyping/gnn/__init__.py,sha256=YMncaTnNczyJ-I96IhCNGcTDtR-UFFE5oj5TVNq5gTk,1486
pathway_subtyping/gnn/attention.py,sha256=8eGPH-QaKFVQdCggK20IwSZTuPsHvKm0QqsiEkkx2Z4,5600
pathway_subtyping/gnn/config.py,sha256=vyG9543d3W9MHQL-qLQsm06Ep0q8ilgRkuD9a3mB-xw,1407
pathway_subtyping/gnn/kg_embeddings.py,sha256=w_VccXlUEmg6bc5RDa5MlHHSnz-O68fAf5sJ8r7t170,14205
pathway_subtyping/gnn/layers.py,sha256=yMglBehoWBSXmCvmhNFTFokR4BIR2kwegF50p8UEmwI,6654
pathway_subtyping/gnn/model.py,sha256=WmU_Do7aNP_VTxhYuem_1Jb5k4jlFrTPPeT37Q5FjUk,11158
pathway_subtyping/gnn/embeddings/__init__.py,sha256=YrizaMFTjwULaC-Mu0VfWH_TD1HIGD9q2GA5heqvE3s,534
pathway_subtyping/gnn/embeddings/fusion.py,sha256=qu8FVz1pPfIwKKgmNdOmFnztfGmPyJQL7wyJyGKIYFE,5392
pathway_subtyping/harmonize/__init__.py,sha256=28_W5uXhTrcHpj7h6_G8YO3K8l9iuYNWf1oqm7IbUII,1486
pathway_subtyping/harmonize/align.py,sha256=_FvcZyDJo-XUgONDvuqlPjum_D7eLBUhBOinBJ0ccoc,10201
pathway_subtyping/harmonize/benchmark.py,sha256=pWXkdMxgK_03sSW1BZHY_OO99uk7OFVE18MBe_EJAeU,10834
pathway_subtyping/harmonize/confidence.py,sha256=KBn58iYhZfnyZjhxppsoyTU1FTj1WFHrcC9ZY_2xt5k,5685
pathway_subtyping/harmonize/uce.py,sha256=RwKn2UEPMHcxQW3KduCAMRi46lJal6TsFUmjNdubTeo,5948
pathway_subtyping/knowledge_graph/__init__.py,sha256=sPZjaldsE_PpQqsAw0pEGcMR7xj6Da6K6RzeUoQvxwo,1883
pathway_subtyping/knowledge_graph/builder.py,sha256=sHFxeC0Q9mWoG_bp6PRwiAJpeJ_WG8hLG8UoynBMr4U,50749
pathway_subtyping/knowledge_graph/diff.py,sha256=NdBrsNthPiXLrw2kmHo8cJ1KLFLmkDmAaYA4rN_Sh7k,6770
pathway_subtyping/knowledge_graph/exporters.py,sha256=L3FnWBi__w0DbvqmY_M8hvUO8z_c1YlC8liwfg_e4bs,14329
pathway_subtyping/knowledge_graph/regression.py,sha256=q_MBwHryf5KvJZV6PYogganwcBlPni7A7a7cMQjH4EI,5326
pathway_subtyping/knowledge_graph/schema.py,sha256=S6UxQLd9hCACOOgzFcAms81q9H9155nUx_xgZIuVZPg,8027
pathway_subtyping/knowledge_graph/sources.py,sha256=aAqK0xPDFiCuyS8l8IeFZfZeaobPr0LsnGkVa3-dbGI,7357
pathway_subtyping/omics/__init__.py,sha256=P715pe_LOYJUoSOPiruD8IolJ8KyEBbhK9BARetKQaA,1421
pathway_subtyping/omics/atac.py,sha256=stTod1ZnA_D2uyGgBRL1twV5pfMn2i--m-J5SaAkJ-o,5173
pathway_subtyping/omics/discordance.py,sha256=I128EiZT-qQNBmyMO5Km2bxbQwajCgNjFA_dlpbQuYo,4814
pathway_subtyping/omics/fusion.py,sha256=c94z1rdgG0JoL8coRZhTjRoQF9gm73oB3hddaAW5Y64,9184
pathway_subtyping/omics/proteomics.py,sha256=SHOA5OxHaUZWbb_FNHPpnKtKs1XkOpZi0zSwJGliVr8,3641
pathway_subtyping/perturb/__init__.py,sha256=-jWF5AeVSuociF1fsAep3nNxva8hrlZ8e00lyAPYo3U,1700
pathway_subtyping/perturb/geneformer_wrapper.py,sha256=643nKJBtIvXP5F3XzO1JWh9G_xgf6OZEgnAu6RANpbA,22281
pathway_subtyping/perturb/msv_from_embedding.py,sha256=waktSImeef_k9zc_gqphpq96UfxfyPNqX_u7h9B8S-s,4223
pathway_subtyping/perturb/report.py,sha256=k_ZnhwrZEA_U-WeONvm9z6VUmt_JR-kpqsbbGG7UIcU,6133
pathway_subtyping/perturb/screen.py,sha256=DFd5PfRhGyMSNg20Vcqm3BCrtUGHSl2PLG187xYfyw4,5605
pathway_subtyping/qc/__init__.py,sha256=W_bMEb1f9GCvdBZ1KsoEX5H1D27VS2lzKHzl0tnmMDo,3378
pathway_subtyping/qc/alphamissense.py,sha256=KGRL47qzjs92jSvfBixfPTO5F_4-EvLH15Y4vAQV1D0,6761
pathway_subtyping/qc/atlas.py,sha256=jx1eWZw8SyDWhjg70sSvUOF3zN9csCc_i6_pDNofg7s,11233
pathway_subtyping/qc/cascade.py,sha256=Kr-J0-eRRnmowrOC0iT1CJbjAV0ASA2xX89oQ0_bK7o,11761
pathway_subtyping/qc/crosstalk.py,sha256=0_aRgnYiS80V3B8G3B1kEdA_ruecimrPV62kdJTei0A,4718
pathway_subtyping/qc/dosage.py,sha256=perITrbZyN2oZZRjlFgy-zQe2qRwzdtKJpaIRYaom7A,9085
pathway_subtyping/qc/drift.py,sha256=YFWnReeno7En8v4go_vU14F9r2LU8afRWx7WZyj9teI,6144
pathway_subtyping/qc/feedback.py,sha256=JuDSL50v0nMhmbhOTcMZb-pt-D2OkyvRCOqO6EpQNw4,5794
pathway_subtyping/qc/gates.py,sha256=YTyHgeeOLpu9HM0P8xOCoYTrmkbVep3qcKvLtFDOW1o,6712
pathway_subtyping/qc/heterogeneity.py,sha256=I0WNOH_5T1ldtRAgY4Y8E0wm2TYXuWamPeNnl5x_1MU,8831
pathway_subtyping/qc/offtarget.py,sha256=6Bejc3u1guqh_3wrxLCbIdeCJ16699T-YIRx6U9Ckc4,7901
pathway_subtyping/qc/offtarget_sequence.py,sha256=1KOHe3uBt7dPs3II5y26yXs2HeKhY01_nYuspresrO8,10706
pathway_subtyping/qc/stress.py,sha256=EaKMw8lSHX3wNVjFF6U8e2WvQMiul86tGKqPa4QhQ9w,7111
pathway_subtyping/qc/temporal.py,sha256=6QRt3G8idluZwwgpKAxtWG_aTAH5IL8uz5KIvBIsSxE,8862
pathway_subtyping/qc/tension.py,sha256=T-T04U-2Zl3HdzbeIEddz7KdBcIBwXIga4APaIb2L4g,6309
pathway_subtyping/qc/testing/__init__.py,sha256=mx6V771FGcEbD9nF2fI92qYwQGK8SVT941L75PvKKK4,552
pathway_subtyping/qc/testing/orthogonality.py,sha256=mM36V0N6DFrs5HeuSCbfr54x7dmFzglVd51vJlCkDrg,9649
pathway_subtyping/qc/testing/severity_titration.py,sha256=Zpd7Tnb9EiLndVKoy2fHEfoGW9klgoZG6r9v2qpOF1M,6382
pathway_subtyping/qc/testing/simulator.py,sha256=bR_xGx-FuPkt1O60_4_NaOUMLeeuYVA-IcdqwEPwDLQ,39227
pathway_subtyping/qc/testing/fixtures/cart_spec.yaml,sha256=ED2NaJsDBOY4dyp9c0pWyTSQ7SUCg6Sxt4fT1-5ywO8,1736
pathway_subtyping/qc/testing/fixtures/feedback_loops.yaml,sha256=av9AMVYIHVRPruASYsLGzZDe66F3-2Frk9jORxNVwpE,2619
pathway_subtyping/qc/testing/fixtures/healthy_batch_spec.yaml,sha256=iNt8QfCIA9qft6E0dW0FRYjf17M_vSU2IfjWNJyP4-g,782
pathway_subtyping/qc/testing/fixtures/stress_signatures.yaml,sha256=dApeUD1YCZOkECdO5KyhYnkpozFOGTYuFoEyl-O-Yz4,2122
pathway_subtyping/qc/testing/fixtures/therapeutic_windows.yaml,sha256=Sme2_BPUOj31NfHCHPOGSaLh1vxN5NT52Ldf8LTOzVg,1876
pathway_subtyping/qc/testing/prospective/__init__.py,sha256=ufV7taCwrSivyghrWvo4hRafNoP89YC5iB8ttHqrQ00,69
pathway_subtyping/qc/testing/retrospective/__init__.py,sha256=777bLRj8vLTlEsv4FUCrCJLz3mv_-gTmXCy_viwD8nU,80
pathway_subtyping/qc/testing/scenarios/__init__.py,sha256=dtptfdipszwmUtMSL1CXVChh9pDIl_ZYT-FXAZ6wjOs,238
pathway_subtyping/qc/testing/scenarios/base.py,sha256=2T0tAzzBfumHCObVNg8yKHDCvJPZ3JeMp8SPXJVol7g,4552
pathway_subtyping/qc/testing/scenarios/cart_manufacturing.py,sha256=Ptgr1nf3dYn4bY7gm9sDRtPYmTwNB1UTYEXAJshS1pw,2644
pathway_subtyping/qc/testing/scenarios/passage_stability.py,sha256=U2ut_bQ12LXZgAiYqH9ZdolV8Zo8skKZHKfJPnUcvpM,3544
pathway_subtyping/qc/testing/scenarios/report_validator.py,sha256=xtyJuzPgRBt7L-eMktYESbJX7usLt09FKYpOJSZu6BA,3778
pathway_subtyping/uncertainty/__init__.py,sha256=gj30zqHapP37nkWIEuKtCIBIey4gfbhjeEzo7Z7Fxmk,1326
pathway_subtyping/uncertainty/bayesian_pathway.py,sha256=fEURCfFZ6lxUOomPTrgeIwgRuxWFSCq9eGIses_RbrE,9786
pathway_subtyping/uncertainty/bootstrap.py,sha256=qfkj0zaeGodclBJhDyWTPVmBLlVZ6N_XoS9rKsqirLM,10028
pathway_subtyping/uncertainty/calibration.py,sha256=4rQhEZpDpKOxjOTczBJl5VwJd_Qao_9V-FHgHrSj8gQ,8382
pathway_subtyping/uncertainty/conformal.py,sha256=xtqEQyNcw6PrrK9mRLfe54rAzriSTW_DPwf_jXMKlCI,8396
pathway_subtyping/utils/__init__.py,sha256=AAbRxC2EGHPacVf8eSAeC2aY73Ny5B1AB1sZFaaLzvo,513
pathway_subtyping/utils/performance.py,sha256=7Ci7YFucz-wKLy_rVznbUWR_uWylE7IqtCFQ-Dv3GG8,15248
pathway_subtyping/utils/seed.py,sha256=ozW7ZNr2fb6BvOfghrTyTVlT6Mt1xT-ZiJoDmub0aWA,1490
pathway_subtyping-0.6.3.dist-info/licenses/LICENSE,sha256=HGNHShARcqwsH1qOrFnv3HDCqrv6csIjnncz8lfanLg,1070
pathway_subtyping-0.6.3.dist-info/METADATA,sha256=4QVKF9HoKW6fkmqwXJmjGlQ6FbaohonGNZ18F7csZxI,26312
pathway_subtyping-0.6.3.dist-info/WHEEL,sha256=aeYiig01lYGDzBgS8HxWXOg3uV61G9ijOsup-k9o1sk,91
pathway_subtyping-0.6.3.dist-info/entry_points.txt,sha256=vx5on_lutq5qipLHjpVHXWLoKYbfapTdFwTXYqkHFLQ,98
pathway_subtyping-0.6.3.dist-info/top_level.txt,sha256=7_qg2GIZ0azOLnKuMh0yfszhyrPHtuvVJ2mdgtIQ5mo,18
pathway_subtyping-0.6.3.dist-info/RECORD,,
