Metadata-Version: 2.1
Name: XPRESStools
Version: 0.0.2b0
Summary: A toolkit for navigating and analyzing gene expression datasets
Home-page: https://github.com/XPRESSyourself/XPRESStools
Author: Jordan Berg
Author-email: jordan.berg@biochem.utah.edu
License: GPL-3.0
Description: # ![XPRESStools](https://raw.githubusercontent.com/XPRESSyourself/XPRESStools/master/docs/content/xpresstools.png)
        
        
        ### A toolkit for navigating and analyzing gene expression datasets
        
        [![Build Status](https://travis-ci.org/XPRESSyourself/XPRESStools.svg?branch=master)](https://travis-ci.org/XPRESSyourself/XPRESStools)
        [![Documentation Status](https://readthedocs.org/projects/xpresstools/badge/?version=latest)](https://xpresstools.readthedocs.io/en/latest/?badge=latest)
        [![PyPi Status](https://img.shields.io/pypi/v/XPRESStools.svg)](https://pypi.org/project/XPRESStools/)
        [![DOI](https://zenodo.org/badge/170940002.svg)](https://zenodo.org/badge/latestdoi/170940002)
        
        ##### Find documentation [here](https://xpressyourself.github.io/XPRESStools/)
        
        -----
        
        ### Development Notes:
        <b><i>XPRESStools is still in beta production</i></b>  
        Interactive scatter plotting functions are not currently tested    
        XPRESStools supports Python 2.7 and >=3.5   
        
        ### Citation:    
        ```
        Berg, JA (2019). XPRESSyourself suite: Gene expression processing and analysis made easy. https://github.com/XPRESSyourself.
        ```
        
        ### Installation:   
        ```
        conda install -c bioconda xpresstools
        ```
        
        ### QuickStart:   
        ```
        >>> import pandas as pd
        >>> import xpresstools as xp   
        
        >>> geo, metadata = xp.get_geo('GSE20916')
        >>> geo = xp.rpm(geo)
        ```
        
        ### Important Notes:    
        * If working with XPRESStools within an interactive notebook (i.e. Jupyter Notebook, Atom Hydrogen, etc), you must include the following line of code after importing XPRESStools
        
        ```
        import XPRESStools as xp
        %matplotlib inline
        ```
        
        * Assumes all dataframes are columns=samples and rows=genes (except in certain cases, see documentation for help)    
        
        ```
        >>> geo.head()
        name       GSM523242  GSM523243  GSM523244  GSM523245  GSM523246  GSM523247    ...     
        1007_s_at    8.98104    8.59941    8.25395    8.72981    8.70794    8.10693    ...       
        1053_at      5.84313    6.59168    8.27881    6.64005    4.65107    7.19090    ...       
        121_at       6.17189    5.73603    5.55673    5.69374    6.77618    5.84524    ...       
        1294_at      6.97009    6.80003    5.56620    7.43816    7.36375    5.85687    ...       
        1405_i_at   10.24611   10.13807    8.84743    9.72365   10.42940    9.17510    ...   
        
        [5 rows x 145 columns]   
        ```
        
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
