Metadata-Version: 2.1
Name: auxiliary
Version: 0.0.3
Summary: TODO.
Author-email: Florian Kofler <florian.kofler@tum.de>
Maintainer-email: Florian Kofler <florian.kofler@tum.de>
Project-URL: repository, https://github.com/neuronflow/auxiliary
Keywords: biomedical image analysis,utils,helpers,auxiliary
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU Affero General Public License v3
Classifier: Operating System :: OS Independent
Requires-Python: >=3.5
Description-Content-Type: text/markdown
Provides-Extra: dev
License-File: LICENSE

# BrainLes: A brain imaging toolkit beyond BraTS and lesion segmentation.

# niftyreg_preprocessor
does the following
* co-registration
* atlas registration
* transformation
* skullstripping in brats-space
* apply masking
* result: 4niftis, skullstripped brats-space -> save to path

## atlas
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2915788/


## installation:
```
pip install -e "git+https://github.com/neuronflow/BrainLes.git@main#egg=HD_BET&subdirectory=preprocessing/brainles_preprocessing/brain_extraction/HD_BET"
```
