LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
PyAntiGen.egg-info/PKG-INFO
PyAntiGen.egg-info/SOURCES.txt
PyAntiGen.egg-info/dependency_links.txt
PyAntiGen.egg-info/entry_points.txt
PyAntiGen.egg-info/requires.txt
PyAntiGen.egg-info/top_level.txt
framework/AntimonyGen.py
framework/RxnDict_to_antimony.py
framework/TelluriumGen.py
framework/__init__.py
framework/antimony_utils.py
framework/cli.py
framework/data_interpolation.py
framework/isotopomer_tools.py
framework/model_generation.py
framework/models.py
framework/module_base.py
framework/pyantigen.py
framework/rate_laws.py
framework/reaction_creation.py
framework/template/Example/AntiGen_paths.py
framework/template/Example/Model_generate.py
framework/template/Example/Model_run.py
framework/template/Example/Engine/Evaluator.py
framework/template/Example/Engine/Model_optimize.py
framework/template/Example/Engine/Model_simulate.py
framework/template/Example/Engine/Nuisance_sensitivity.py
framework/template/Example/Engine/Optimize.py
framework/template/Example/Engine/Petab_export.py
framework/template/Example/Engine/Profile_checkpoint.py
framework/template/Example/Engine/Results.py
framework/template/Example/Engine/Sensitivity_analysis.py
framework/template/Example/Engine/Simulate.py
framework/template/Example/Modules/Data.py
framework/template/Example/Modules/Events.py
framework/template/Example/Modules/Experiment.py
framework/template/Example/Modules/Loss_config.py
framework/template/Example/Modules/Observed_species.py
framework/template/Example/Modules/Optimizer_settings.py
framework/template/Example/Modules/Plots.py
framework/template/Example/Modules/Solver_settings.py
framework/template/Example/Modules/Update_opt_parameters.py
framework/template/Example/Modules/Update_parameters.py
framework/template/data/ADneg.csv
framework/template/data/ADpos.csv