.gitignore
README.md
environment.yml
pyproject.toml
.github/workflows/release.yml
CIDBN_neuron_detection.egg-info/PKG-INFO
CIDBN_neuron_detection.egg-info/SOURCES.txt
CIDBN_neuron_detection.egg-info/dependency_links.txt
CIDBN_neuron_detection.egg-info/entry_points.txt
CIDBN_neuron_detection.egg-info/requires.txt
CIDBN_neuron_detection.egg-info/scm_file_list.json
CIDBN_neuron_detection.egg-info/scm_version.json
CIDBN_neuron_detection.egg-info/top_level.txt
neuron_detection/__init__.py
neuron_detection/__main__.py
neuron_detection/_version.py
neuron_detection/run_detection.py
neuron_detection/image_processing/__init__.py
neuron_detection/image_processing/motion_correct.py
neuron_detection/image_processing/neuron_detection.py
neuron_detection/image_processing/tiff_align.py
neuron_detection/motion_correction/LK_alignment.py
neuron_detection/preprocessing/__init__.py
neuron_detection/preprocessing/file_structures/__init__.py
neuron_detection/preprocessing/file_structures/get_data_from_server.py
neuron_detection/preprocessing/file_structures/make_tif_stack.py
neuron_detection/utils/__init__.py
neuron_detection/utils/build_alignment_template.py
neuron_detection/utils/parameters.py