Metadata-Version: 2.1
Name: bam2html
Version: 1.0.0
Summary: Generate Highlighted HTML for BAM
Home-page: https://github.com/suqingdong/bam2html
Author: suqingdong
Author-email: suqingdong@novogene.com
License: BSD License
Project-URL: Documentation, https://bam2html.readthedocs.io
Project-URL: Tracker, https://github.com/suqingdong/bam2html/issues
Description: # Generate Highlighted HTML of Bam
        > highlight the specific sites of html which output by `samtools tview`
        
        
        ## Dependencies
        - Linux/Unix
        - Samtools
        - Python2/Python3
        
        
        ## Examples
        ```bash
        bam2html <input.bam> chrom:pos           # single position
        bam2html <input.bam> chrom:pos1,pos2...  # multiple positions
        bam2html <input.bam> chrom:start-end     # a region of positions
        bam2html <input.bam> chrom:pos -r /path/to/reference.fa # with reference
        ```
        
        ## Meaning of Base's Colors
        | Color | Mapping Quality | Selector |
        | - | - | - |
        | Blue | 0-9 | .tviewcu1 |
        | Green | 10-19 | .tviewc2 |
        | Yellow | 20-29 | .tviewc3 |
        | Black |>=30 | .tviewc4 |
        
        > Underline: Secondary or orphan
        
        
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Software Development :: Libraries
Description-Content-Type: text/markdown
