CHANGES.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
versioneer.py
qsiprep/__about__.py
qsiprep/__init__.py
qsiprep/_version.py
qsiprep.egg-info/PKG-INFO
qsiprep.egg-info/SOURCES.txt
qsiprep.egg-info/dependency_links.txt
qsiprep.egg-info/entry_points.txt
qsiprep.egg-info/not-zip-safe
qsiprep.egg-info/requires.txt
qsiprep.egg-info/top_level.txt
qsiprep/cli/__init__.py
qsiprep/cli/convertODFs.py
qsiprep/cli/run.py
qsiprep/data/__init__.py
qsiprep/data/affine.json
qsiprep/data/bids.json
qsiprep/data/boilerplate.bib
qsiprep/data/epi_atlasbased_brainmask.json
qsiprep/data/epi_registration_settings.json
qsiprep/data/fmap-any_registration.json
qsiprep/data/fmap-any_registration_testing.json
qsiprep/data/itkIdentityTransform.txt
qsiprep/data/mni_1mm_t1w_lps.nii.gz
qsiprep/data/mni_1mm_t1w_lps_brain.nii.gz
qsiprep/data/mni_lps_fmap_atlas.nii.gz
qsiprep/data/odfs.mat
qsiprep/data/quick_syn.json
qsiprep/data/susceptibility_syn.json
qsiprep/data/translation_rigid.json
qsiprep/engine/__init__.py
qsiprep/engine/workflows.py
qsiprep/interfaces/__init__.py
qsiprep/interfaces/anatomical.py
qsiprep/interfaces/bids.py
qsiprep/interfaces/confounds.py
qsiprep/interfaces/connectivity.py
qsiprep/interfaces/converters.py
qsiprep/interfaces/dipy.py
qsiprep/interfaces/dsi_studio.py
qsiprep/interfaces/dwi_merge.py
qsiprep/interfaces/fmap.py
qsiprep/interfaces/freesurfer.py
qsiprep/interfaces/gradients.py
qsiprep/interfaces/images.py
qsiprep/interfaces/itk.py
qsiprep/interfaces/mrtrix.py
qsiprep/interfaces/nilearn.py
qsiprep/interfaces/niworkflows.py
qsiprep/interfaces/reports.py
qsiprep/interfaces/surf.py
qsiprep/interfaces/utils.py
qsiprep/interfaces/tests/__init__.py
qsiprep/interfaces/tests/test_images.py
qsiprep/niworkflows/__about__.py
qsiprep/niworkflows/__init__.py
qsiprep/niworkflows/_version.py
qsiprep/niworkflows/due.py
qsiprep/niworkflows/anat/__init__.py
qsiprep/niworkflows/anat/ants.py
qsiprep/niworkflows/anat/skullstrip.py
qsiprep/niworkflows/common/__init__.py
qsiprep/niworkflows/common/orient.py
qsiprep/niworkflows/data/__init__.py
qsiprep/niworkflows/data/bold-mni_registration_precise_000.json
qsiprep/niworkflows/data/bold-mni_registration_precise_001.json
qsiprep/niworkflows/data/bold-mni_registration_precise_002.json
qsiprep/niworkflows/data/bold-mni_registration_testing_000.json
qsiprep/niworkflows/data/bold-mni_registration_testing_001.json
qsiprep/niworkflows/data/bold-mni_registration_testing_002.json
qsiprep/niworkflows/data/getters.py
qsiprep/niworkflows/data/t1w-mni_registration_fast_000.json
qsiprep/niworkflows/data/t1w-mni_registration_precise_000.json
qsiprep/niworkflows/data/t1w-mni_registration_precise_001.json
qsiprep/niworkflows/data/t1w-mni_registration_precise_002.json
qsiprep/niworkflows/data/t1w-mni_registration_testing_000.json
qsiprep/niworkflows/data/t1w-mni_registration_testing_001.json
qsiprep/niworkflows/data/t1w-mni_registration_testing_002.json
qsiprep/niworkflows/data/utils.py
qsiprep/niworkflows/dwi/__init__.py
qsiprep/niworkflows/engine/__init__.py
qsiprep/niworkflows/engine/workflows.py
qsiprep/niworkflows/func/__init__.py
qsiprep/niworkflows/interfaces/__init__.py
qsiprep/niworkflows/interfaces/ants.py
qsiprep/niworkflows/interfaces/bids.py
qsiprep/niworkflows/interfaces/cifti.py
qsiprep/niworkflows/interfaces/fixes.py
qsiprep/niworkflows/interfaces/freesurfer.py
qsiprep/niworkflows/interfaces/images.py
qsiprep/niworkflows/interfaces/itk.py
qsiprep/niworkflows/interfaces/masks.py
qsiprep/niworkflows/interfaces/mni.py
qsiprep/niworkflows/interfaces/patches.py
qsiprep/niworkflows/interfaces/plotting.py
qsiprep/niworkflows/interfaces/registration.py
qsiprep/niworkflows/interfaces/report_base.py
qsiprep/niworkflows/interfaces/segmentation.py
qsiprep/niworkflows/interfaces/surf.py
qsiprep/niworkflows/interfaces/utils.py
qsiprep/niworkflows/utils/__init__.py
qsiprep/niworkflows/utils/bids.py
qsiprep/niworkflows/utils/misc.py
qsiprep/niworkflows/viz/__init__.py
qsiprep/niworkflows/viz/plots.py
qsiprep/niworkflows/viz/reports.py
qsiprep/niworkflows/viz/utils.py
qsiprep/utils/__init__.py
qsiprep/utils/atlases.py
qsiprep/utils/bids.py
qsiprep/utils/brainsuite_shore.py
qsiprep/utils/bspline.py
qsiprep/utils/maths.c
qsiprep/utils/maths.pyx
qsiprep/utils/misc.py
qsiprep/utils/shm.py
qsiprep/utils/testing.py
qsiprep/viz/__init__.py
qsiprep/viz/config.json
qsiprep/viz/report.tpl
qsiprep/viz/reports.py
qsiprep/workflows/__init__.py
qsiprep/workflows/anatomical.py
qsiprep/workflows/base.py
qsiprep/workflows/dwi/__init__.py
qsiprep/workflows/dwi/base.py
qsiprep/workflows/dwi/confounds.py
qsiprep/workflows/dwi/fsl.py
qsiprep/workflows/dwi/hmc.py
qsiprep/workflows/dwi/merge.py
qsiprep/workflows/dwi/registration.py
qsiprep/workflows/dwi/resampling.py
qsiprep/workflows/dwi/util.py
qsiprep/workflows/fieldmap/__init__.py
qsiprep/workflows/fieldmap/base.py
qsiprep/workflows/fieldmap/bidirectional_pepolar.py
qsiprep/workflows/fieldmap/pepolar.py
qsiprep/workflows/fieldmap/syn.py
qsiprep/workflows/fieldmap/unwarp.py
qsiprep/workflows/recon/__init__.py
qsiprep/workflows/recon/base.py
qsiprep/workflows/recon/build_workflow.py
qsiprep/workflows/recon/converters.py
qsiprep/workflows/recon/dipy.py
qsiprep/workflows/recon/dsi_studio.py
qsiprep/workflows/recon/dynamics.py
qsiprep/workflows/recon/interchange.py
qsiprep/workflows/recon/mrtrix.py
qsiprep/workflows/recon/utils.py
qsiprep/workflows/tests/test_recon.py