LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
DNBC4dev.egg-info/PKG-INFO
DNBC4dev.egg-info/SOURCES.txt
DNBC4dev.egg-info/dependency_links.txt
DNBC4dev.egg-info/entry_points.txt
DNBC4dev.egg-info/requires.txt
DNBC4dev.egg-info/top_level.txt
dnbc4tools/__init__.py
dnbc4tools/dnbc4tools.py
dnbc4tools/atac/__init__.py
dnbc4tools/atac/analysis.py
dnbc4tools/atac/data.py
dnbc4tools/atac/decon.py
dnbc4tools/atac/dnbc4atac.py
dnbc4tools/atac/mkref.py
dnbc4tools/atac/multi.py
dnbc4tools/atac/report.py
dnbc4tools/atac/run.py
dnbc4tools/atac/src/Cluster_signac.R
dnbc4tools/atac/src/__init__.py
dnbc4tools/atac/src/calculate_jaccardindex.so
dnbc4tools/atac/src/filter_qc.so
dnbc4tools/atac/src/generate_report.so
dnbc4tools/atac/src/scanpy_cluster.so
dnbc4tools/config/atac/whitelist_atac.txt.gz
dnbc4tools/config/blacklist/hg19.full.blacklist.bed
dnbc4tools/config/blacklist/hg38.full.blacklist.bed
dnbc4tools/config/blacklist/mm10.full.blacklist.bed
dnbc4tools/config/cellbarcode/oligo_type.json
dnbc4tools/config/cellbarcode/oligo_type.txt
dnbc4tools/config/cellbarcode/scRNA_beads_darkReaction.json
dnbc4tools/config/cellbarcode/scRNA_oligo_R2_noDarkReaction.json
dnbc4tools/config/cellbarcode/scRNA_oligo_darkReaction.json
dnbc4tools/config/cellbarcode/scRNA5Pv1/scRNA_beads_v1.json
dnbc4tools/config/cellbarcode/scRNA5Pv1/scRNA_oligo_v1.json
dnbc4tools/config/cellbarcode/scRNAv1HT/scRNA_beads_v1.json
dnbc4tools/config/cellbarcode/scRNAv1HT/scRNA_oligo_v1.json
dnbc4tools/config/cellbarcode/scRNAv2v3HT/scRNA_beads_v2_3.json
dnbc4tools/config/cellbarcode/scRNAv2v3HT/scRNA_oligo_v2_3.json
dnbc4tools/config/cellbarcode/scVDJv1/scVDJ_beads_dark_PE.json
dnbc4tools/config/cellbarcode/scVDJv1/scVDJ_beads_dark_SE.json
dnbc4tools/config/cellbarcode/scVDJv1/scVDJ_beads_v1_PE.json
dnbc4tools/config/cellbarcode/scVDJv1/scVDJ_beads_v1_SE.json
dnbc4tools/config/rna/HCL.ref.csv.gz
dnbc4tools/config/rna/MCA.ref.csv.gz
dnbc4tools/config/rna/adapter.txt
dnbc4tools/config/template/template_scATAC.html
dnbc4tools/config/template/template_scRNA.html
dnbc4tools/config/template/template_scRNA_noanno.html
dnbc4tools/config/template/template_scVDJ_BCR.html
dnbc4tools/config/template/template_scVDJ_TCR.html
dnbc4tools/config/vdj/GRCh38_bcrtcr.fa
dnbc4tools/config/vdj/GRCm38_bcrtcr.fa
dnbc4tools/config/vdj/human_IMGT+C.fa
dnbc4tools/config/vdj/mouse_IMGT+C.fa
dnbc4tools/rna/__init__.py
dnbc4tools/rna/analysis.py
dnbc4tools/rna/count.py
dnbc4tools/rna/data.py
dnbc4tools/rna/dnbc4rna.py
dnbc4tools/rna/mkref.py
dnbc4tools/rna/multi.py
dnbc4tools/rna/report.py
dnbc4tools/rna/run.py
dnbc4tools/rna/src/__init__.py
dnbc4tools/rna/src/generate_report.so
dnbc4tools/rna/src/oligo_filter.so
dnbc4tools/rna/src/scanpy_cluster.so
dnbc4tools/rna/src/singlecell_summary.so
dnbc4tools/rna/src/staranno.so
dnbc4tools/software/Anno
dnbc4tools/software/PISA
dnbc4tools/software/chromap
dnbc4tools/software/parseFq
dnbc4tools/software/scStar
dnbc4tools/software/seqkit
dnbc4tools/software/similarity
dnbc4tools/software/tagAdd
dnbc4tools/software/TRUST4/annotator
dnbc4tools/software/TRUST4/fastq-extractor
dnbc4tools/software/TRUST4/trust4
dnbc4tools/tools/__init__.py
dnbc4tools/tools/cal_saturation.so
dnbc4tools/tools/cell_calling.so
dnbc4tools/tools/changetag.py
dnbc4tools/tools/checkgtf.so
dnbc4tools/tools/chemistydark.so
dnbc4tools/tools/clean.py
dnbc4tools/tools/combineBeads.so
dnbc4tools/tools/description.so
dnbc4tools/tools/io.so
dnbc4tools/tools/mkgtf.py
dnbc4tools/tools/plot_draw.so
dnbc4tools/tools/plotly_draw.so
dnbc4tools/tools/text.so
dnbc4tools/tools/utils.py
dnbc4tools/vdj/__init__.py
dnbc4tools/vdj/assembly.py
dnbc4tools/vdj/data.py
dnbc4tools/vdj/dnbc4vdj.py
dnbc4tools/vdj/filter.py
dnbc4tools/vdj/report.py
dnbc4tools/vdj/run.py
dnbc4tools/vdj/src/clonotype_gen.so
dnbc4tools/vdj/src/cut_fastq_cbub.so
dnbc4tools/vdj/src/filter_annotation.so
dnbc4tools/vdj/src/filter_barcode.so
dnbc4tools/vdj/src/filter_vdj.so
dnbc4tools/vdj/src/generate_report.so
dnbc4tools/vdj/src/split_assembly_anno.so
dnbc4tools/vdj/src/trust-airr.pl
dnbc4tools/vdj/src/trust-barcoderep.pl
dnbc4tools/vdj/src/trust-simplerep.pl