LICENSE.txt
MANIFEST.in
PKG-INFO
README.txt
distribute_setup.py
setup.cfg
setup.py
bin/.DS_Store
bin/CrossMap.py
data/.DS_Store
data/Ensembl_chain/readme.txt
data/Ensembl_chain/human/GRCh37_to_GRCh38.chain.gz
data/Ensembl_chain/human/GRCh37_to_NCBI34.chain.gz
data/Ensembl_chain/human/GRCh37_to_NCBI35.chain.gz
data/Ensembl_chain/human/GRCh37_to_NCBI36.chain.gz
data/Ensembl_chain/human/GRCh38_to_GRCh37.chain.gz
data/Ensembl_chain/human/GRCh38_to_NCBI34.chain.gz
data/Ensembl_chain/human/GRCh38_to_NCBI35.chain.gz
data/Ensembl_chain/human/GRCh38_to_NCBI36.chain.gz
data/Ensembl_chain/human/NCBI34_to_GRCh37.chain.gz
data/Ensembl_chain/human/NCBI34_to_GRCh38.chain.gz
data/Ensembl_chain/human/NCBI35_to_GRCh37.chain.gz
data/Ensembl_chain/human/NCBI35_to_GRCh38.chain.gz
data/Ensembl_chain/human/NCBI36_to_GRCh37.chain.gz
data/Ensembl_chain/human/NCBI36_to_GRCh38.chain.gz
data/Ensembl_chain/human/checksums.txt
data/Ensembl_chain/mouse/GRCm38_to_NCBIM36.chain.gz
data/Ensembl_chain/mouse/GRCm38_to_NCBIM37.chain.gz
data/Ensembl_chain/mouse/NCBIM36_to_GRCm38.chain.gz
data/Ensembl_chain/mouse/NCBIM37_to_GRCm38.chain.gz
data/Ensembl_chain/mouse/checksums.txt
data/UCSC_chain/GRCh37ToHg19.over.chain.gz
data/UCSC_chain/checksums.txt
data/UCSC_chain/hg17ToHg18.over.chain.gz
data/UCSC_chain/hg17ToHg19.over.chain.gz
data/UCSC_chain/hg18ToHg17.over.chain.gz
data/UCSC_chain/hg18ToHg19.over.chain.gz
data/UCSC_chain/hg18ToHg38.over.chain.gz
data/UCSC_chain/hg19ToGRCh37.over.chain.gz
data/UCSC_chain/hg19ToHg17.over.chain.gz
data/UCSC_chain/hg19ToHg18.over.chain.gz
data/UCSC_chain/hg19ToHg38.over.chain.gz
data/UCSC_chain/hg38ToHg19.over.chain
data/UCSC_chain/mm10ToMm9.over.chain.gz
data/UCSC_chain/mm9ToMm10.over.chain.gz
data/UCSC_chain/mm9ToMm8.over.chain.gz
data/UCSC_chain/readme.txt
doc/README.rst
doc/homepage.txt
lib/psyco_full.py
lib/CrossMap.egg-info/PKG-INFO
lib/CrossMap.egg-info/SOURCES.txt
lib/CrossMap.egg-info/dependency_links.txt
lib/CrossMap.egg-info/not-zip-safe
lib/CrossMap.egg-info/requires.txt
lib/CrossMap.egg-info/top_level.txt
lib/cmmodule/BED.py
lib/cmmodule/SAM.py
lib/cmmodule/__init__.py
lib/cmmodule/annoGene.py
lib/cmmodule/bam_cigar.py
lib/cmmodule/bgrMerge.py
lib/cmmodule/dotProduct.py
lib/cmmodule/fasta.py
lib/cmmodule/ireader.py
lib/cmmodule/mystat.py
lib/cmmodule/myutils.py
lib/cmmodule/quantile.py
lib/cmmodule/sam_header.py
lib/cmmodule/twoList.py
lib/cmmodule/wig_reader.py
lib/cmmodule/wiggle.py
scripts/chain_to_table.py
test/.DS_Store
test/0_hg19.bed12
test/0_hg19.bed3
test/1_hg19.vcf
test/2_hg19.bam
test/2_hg19.bam.bai
test/3_hg19.bw
test/4_hg19.bgr
test/5_hg19.fixedStep.bw
test/5_hg19.fixedStep.wig
test/6_hg19.variableStep.bw
test/6_hg19.variableStep.wig
test/7_hg19.gtf
test/out
test/out.unmap
test/output_hg38
test/output_hg38.bw
test/output_hg38.sorted.bgr
test/output_hg38.unmap
test/test.sh