Metadata-Version: 1.1
Name: bayerstraits_16s
Version: 1.0.2
Summary: Inferring traits by 16S
Home-page: https://github.com/caozhichongchong/BayersTraits_16S
Author: Anni Zhang
Author-email: anniz44@mit.edu
License: MIT
Description: # bayerstraits_16s
        # This is a temp version of bayerstraits_16s
        ## Install
        pip install bayerstraits_16s\
        in preparation: anaconda download caozhichongchong/bayerstraits_16s
        
        ## Test (any of these two commands)
        bayerstraits_16s --test\
        bayerstraits_16s -t your.otu.table -s your.otu.seqs
        
        ## Availability
        in preparation: https://anaconda.org/caozhichongchong/bayerstraits_16s
        
        https://pypi.org/project/bayerstraits_16s
        
        ## How to use it
        1. test the bayerstraits_16s\
        bayerstraits_16s --test
        
        2. try your data\
        bayerstraits_16s -t your.otu.table -s your.otu.seqs\
        bayerstraits_16s -t your.otu.table -s your.otu.seqs -top 2000
        
        3. use your own traits\
        bayerstraits_16s -t your.otu.table -s your.otu.seqs --rs your.own.reference.16s --rt your.own.reference.traits
        
        your.own.reference.16s is a fasta file containing the 16S sequences of your genomes\
        \>Genome_ID1\
        ATGC...\
        \>Genome_ID2\
        ATGC...
        
        your.own.reference.traits is a metadata of whether there's trait in your genomes (0 for no and 1 for yes)\
        Genome_ID1   0\
        Genome_ID1   1
        
        ## Introduction
        bayerstraits_16s infers traits by 16S\
        input: otu table (-t) and otu sequences (-s)\
        requirement: mafft\
        Optional: fasttree
        
        ## Copyright
        Copyright:An Ni Zhang, Prof. Eric Alm, MIT\
        Citation:\
        Contact anniz44@mit.edu
        
Keywords: 16S,bacterial genomes,function,traits
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
