LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
assets/BioNeuralNet.png
assets/DPMON.png
assets/LOGO_TB.png
assets/LOGO_TB.svg
assets/LOGO_WB.png
assets/LOGO_WB.svg
assets/Overview.png
assets/SubjectRepresentation.png
assets/geometric.png
assets/pytorch.png
assets/repo.png
bioneuralnet/__init__.py
bioneuralnet.egg-info/PKG-INFO
bioneuralnet.egg-info/SOURCES.txt
bioneuralnet.egg-info/dependency_links.txt
bioneuralnet.egg-info/requires.txt
bioneuralnet.egg-info/top_level.txt
bioneuralnet/analysis/__init__.py
bioneuralnet/analysis/correlation_analysis.py
bioneuralnet/clustering/__init__.py
bioneuralnet/clustering/pagerank.py
bioneuralnet/downstream_task/__init__.py
bioneuralnet/downstream_task/dpmon.py
bioneuralnet/external_tools/__init__.py
bioneuralnet/external_tools/dynamic_visualization.py
bioneuralnet/external_tools/feature_selector.py
bioneuralnet/external_tools/hierarchical.py
bioneuralnet/external_tools/node2vec.py
bioneuralnet/external_tools/smccnet.py
bioneuralnet/external_tools/static_visualization.py
bioneuralnet/external_tools/wgcna.py
bioneuralnet/network_embedding/__init__.py
bioneuralnet/network_embedding/gnn_embedding.py
bioneuralnet/network_embedding/gnn_models.py
bioneuralnet/subject_representation/__init__.py
bioneuralnet/subject_representation/subject_representation.py
bioneuralnet/utils/__init__.py
bioneuralnet/utils/logger.py
bioneuralnet/utils/path_utils.py
docs/source/conf.py
docs/source/faq.rst
docs/source/gnns.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/user_api.rst
docs/source/_autosummary/bioneuralnet.downstream_task.DPMON.rst
docs/source/_autosummary/bioneuralnet.downstream_task.rst
docs/source/_autosummary/bioneuralnet.external_tools.dynamic_visualization.rst
docs/source/_autosummary/bioneuralnet.external_tools.feature_selector.rst
docs/source/_autosummary/bioneuralnet.external_tools.hierarchical.rst
docs/source/_autosummary/bioneuralnet.external_tools.node2vec.rst
docs/source/_autosummary/bioneuralnet.external_tools.rst
docs/source/_autosummary/bioneuralnet.external_tools.smccnet.rst
docs/source/_autosummary/bioneuralnet.external_tools.static_visualization.rst
docs/source/_autosummary/bioneuralnet.external_tools.wgcna.rst
docs/source/_autosummary/bioneuralnet.network_embedding.gnn_embedding.rst
docs/source/_autosummary/bioneuralnet.network_embedding.gnn_models.rst
docs/source/_autosummary/bioneuralnet.network_embedding.rst
docs/source/_autosummary/bioneuralnet.subject_representation.rst
docs/source/_autosummary/bioneuralnet.subject_representation.subject_representation.rst
docs/source/_autosummary/bioneuralnet.utils.logger.rst
docs/source/_autosummary/bioneuralnet.utils.path_utils.rst
docs/source/_autosummary/bioneuralnet.utils.rst
docs/source/_static/BioNeuralNet.png
docs/source/_static/BioNeuralNet_canva_logo_TB.png
docs/source/_static/BioNeuralNet_canva_logo_TB.svg
docs/source/_static/BioNeuralNet_canva_logo_WB.png
docs/source/_static/BioNeuralNet_canva_logo_WB.svg
docs/source/_static/DPMON.png
docs/source/_static/LOGO_TB.png
docs/source/_static/LOGO_TB.svg
docs/source/_static/LOGO_WB.png
docs/source/_static/LOGO_WB.svg
docs/source/_static/Overview.png
docs/source/_static/SubjectRepresentation.png
docs/source/_static/geometric.png
docs/source/_static/pytorch.png
docs/source/_static/repo.png
docs/source/examples/dpmon_example.py
docs/source/examples/dynamic_visualization_example.py
docs/source/examples/example_1.py
docs/source/examples/example_2.py
docs/source/examples/feature_selector_example.py
docs/source/examples/gnn_embedding_example.py
docs/source/examples/hierarchical_example.py
docs/source/examples/node2vec_example.py
docs/source/examples/pagerank_example.py
docs/source/examples/smccnet_example.py
docs/source/examples/static_visualization_example.py
docs/source/examples/subject_representation_example.py
docs/source/examples/wgcna_example.py
docs/source/external_tools/Analysis_and_Visualization.rst
docs/source/external_tools/Graph_Construction.rst
docs/source/external_tools/index.rst
docs/source/tools/Disease_Prediction.rst
docs/source/tools/Graph_Clustering.rst
docs/source/tools/Graph_Embedding.rst
docs/source/tools/Subject_Representation.rst
docs/source/tools/index.rst
docs/source/tutorials/example_1.rst
docs/source/tutorials/example_2.rst
docs/source/tutorials/index.rst
scripts/fast-install.py
tests/test_dpmon.py
tests/test_dynamic_visualization.py
tests/test_feature_selector.py
tests/test_gnn_embedding.py
tests/test_hierarchical.py
tests/test_hybrid_clustering.py
tests/test_node2vec.py
tests/test_pagerank.py
tests/test_smccnet.py
tests/test_static_visualization.py
tests/test_subject_representation.py
tests/test_utils.py
tests/test_wgcna.py