Metadata-Version: 2.1
Name: draupnir
Version: 0.0.192
Summary: Ancestral sequence reconstruction using a tree structured Ornstein Uhlenbeck variational autoencoder
Home-page: https://github.com/LysSanzMoreta/DRAUPNIR_ASR
Author: Lys Sanz Moreta
Author-email: lys.sanz.moreta@outlook.com
License: UNKNOWN
Project-URL: Changelog, https://github.com/LysSanzMoreta/DRAUPNIR_ASR/blob/master/CHANGELOG.rst
Project-URL: Issue Tracker, https://github.com/LysSanzMoreta/DRAUPNIR_ASR/issues
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3 :: Only
Requires-Python: >=3.6, <4
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pyro-ppl (==1.6.0)
Requires-Dist: biopython (>=1.78)
Requires-Dist: pandas (==1.0.1)
Requires-Dist: matplotlib (>=3.3.4)
Requires-Dist: ete3 (==3.1.1)
Requires-Dist: dgl-cu111 (==0.6.1)
Requires-Dist: dill (==0.3.3)
Requires-Dist: seaborn (==0.11.2)
Requires-Dist: pytorch-ignite (==0.4.4)
Requires-Dist: scipy (==1.5.4)
Requires-Dist: scikit-learn (==0.24.1)
Requires-Dist: umap-learn (==0.5.2gdown==4.3.1)

DRAUPNIR: "I am a very Beta version, do not use me"

##Requirements for tree inference:

IQ-Tree: http://www.iqtree.org/doc/Quickstart

conda install -c bioconda iqtree

RapidNJ: https://birc.au.dk/software/rapidnj

conda config --add channels bioconda

conda install rapidnj

##Requirements for patristic matrix construction

Install R and ape and TreeDist libraries












