.DS_Store
.gitignore
LICENSE.txt
MANIFEST.in
README.md
setup.py
MetaCHIP2/.DS_Store
MetaCHIP2/COG_boxplot_last1row.R
MetaCHIP2/COG_boxplot_last2row.R
MetaCHIP2/MetaCHIP2_config.py
MetaCHIP2/Ranger-DTL.linux
MetaCHIP2/Ranger-DTL.mac
MetaCHIP2/RootTree.py
MetaCHIP2/VERSION
MetaCHIP2/__init__.py
MetaCHIP2/add_group_to_tree.R
MetaCHIP2/circos.py
MetaCHIP2/circos_HGT.R
MetaCHIP2/detect.py
MetaCHIP2/enrich.py
MetaCHIP2/infer.py
MetaCHIP2/prokka.py
MetaCHIP2/pycircos.py
MetaCHIP2/stats.py
MetaCHIP2/tree.py
MetaCHIP2.egg-info/PKG-INFO
MetaCHIP2.egg-info/SOURCES.txt
MetaCHIP2.egg-info/dependency_links.txt
MetaCHIP2.egg-info/requires.txt
MetaCHIP2.egg-info/top_level.txt
bin/.DS_Store
bin/MetaCHIP2
images/Combined_trees.png
images/Gene_flow.jpg
images/MetaCHIP_logo.jpg
images/end_match.jpg
images/flanking_regions.png
images/full_length_match.jpg
images/identity_distribution.png
input_file_examples/blastn_js_header.sh
input_file_examples/customized_grouping.txt
input_file_examples/human_gut_bins_GTDB.tsv
input_file_examples/human_gut_bins/bin111.fasta
input_file_examples/human_gut_bins/bin1322.fasta
input_file_examples/human_gut_bins/bin15.fasta
input_file_examples/human_gut_bins/bin27.fasta
input_file_examples/human_gut_bins/bin30.fasta
input_file_examples/human_gut_bins/bin35.fasta
input_file_examples/human_gut_bins/bin51.fasta
input_file_examples/human_gut_bins/bin69.fasta
input_file_examples/human_gut_bins/bin829.fasta
input_file_examples/human_gut_bins/bin96.fasta
manual/Instruction_for_installing_Ranger-DTL2.txt
manual/MetaCHIP_katana users.sh
manual/enrichment.md
manual/stats.md
manual/file_backup/MetaCHIP_User_Manual_v1.0.docx
manual/file_backup/MetaCHIP_User_Manual_v1.0.pdf
manual/file_backup/MetaCHIP_User_Manual_v1.1.10.docx
manual/file_backup/MetaCHIP_User_Manual_v1.1.10.pdf
manual/file_backup/MetaCHIP_User_Manual_v1.1_TT.docx