Metadata-Version: 2.1
Name: BioClients
Version: 0.0.4
Summary: Clients to online biomedical resources, usually REST APIs.
Home-page: https://github.com/jeremyjyang/BioClients
Author: Jeremy Yang
Author-email: jeremyjyang@gmail.com
License: UNKNOWN
Description: # BioClients
        
        Python package for access to online biomedical resources,
        usually via REST APIs. Modules generally include
        `Client.py` for command-line use and `Utils.py` for
        integration into other code. With the advent of HTTP web services,
        first SOAP/XML and then mostly REST/JSON, many online APIs
        require very similar methods for data search, requests
        and transforms into usable formats, often CSV/TSV.
        
        ## Availability and installation
        
        Source at <https://github.com/jeremyjyang/BioClients>;
        releases available via `pypi.org`:
        <https://pypi.org/project/BioClients/>
        (`pip3 install BioClients`).
        
        However, current development snapshot recommended.
        
        ___(First download or clone.)___
        ```
        $ cd BioClients
        $ python3 setup.py install
        ```
        
        ## Dependencies
        
        * Python 3.6+
        * Python packages: `pandas`, `requests`, `urllib`, `json`, `xml`, etc.
        
        ## Modules
        
         [__AMP-T2D__](doc/amp__t2d.md) &#8226;  [__BioGrid__](doc/biogrid.md) &#8226;  [__BRENDA__](doc/brenda.md) &#8226;  [__Chem2Bio2RDF__](doc/chem2bio2rdf.md) &#8226;  [__ChEMBL__](doc/chembl.md) &#8226; [__Disease Ontology__](doc/diseaseontology.md) &#8226;  [__DisGeNet__](doc/disgenet.md) &#8226;  [__DNorm__](doc/dnorm.md) &#8226;  [__DrugCentral__](doc/drugcentral.md) &#8226;  [__EnsEMBL__](doc/ensembl.md) &#8226;  [__FDA__](doc/fda.md) &#8226;  [__Gene Ontology__](doc/geneontology.md) &#8226;  [__GWAS Catalog__](doc/gwascatalog.md) &#8226;  [__HUGO__](doc/hugo.md) &#8226;  [__HumanBase__](doc/humanbase.md) &#8226;  [__iCite__](doc/icite.md) &#8226;  [__IDG__](doc/idg.md) &#8226; [__JensenLab__](doc/jensenlab.md) &#8226; [__LINCS__](doc/lincs.md) &#8226; [__MaayanLab__](doc/maayanlab.md) 
        &#8226; [__MeSH__](doc/mesh.md) &#8226;  [__MONARCH__](doc/monarch.md) &#8226;  [__OMIM__](doc/omim.md) &#8226;  [__Open Targets__](doc/opentargets.md) &#8226;  [__Panther__](doc/panther.md) &#8226;  [__PDB__](doc/pdb.md) &#8226;  [__PubChem__](doc/pubchem.md) &#8226;  [__PubMed__](doc/pubmed.md) &#8226;  [__PubTator__](doc/pubtator.md) &#8226;  [__Reactome__](doc/reactome.md) &#8226;  [__RXNorm__](doc/rxnorm.md) &#8226;  [__STRINGDB__](doc/stringdb.md) &#8226;  [__TIN-X__](doc/tinx.md) &#8226;  [__UMLS__](doc/umls.md) &#8226;  [__UniProt__](doc/uniprot.md) 
        
        ## Usage
        
        ```
        $ python3 -m BioClients.pubchem.Client -h
        ```
        
        ## Data structures and formats, XML, JSON, and CSV/TSV
        
        BioClients is designed to be simple and practical, and XML, JSON
        and CSV/TSV are likewise simple in many respects, yet a great deal
        of conceptual and technological progress is reflected. XML and JSON
        can represent arbitrarily complex data objects, comprised of nested lists,
        dictionaries, and trees of primary types. CSV/TSV represents tables of
        rows and columns, the relational db view, flattened as needed for many
        applications (e.g. ML) but related by common keys. Transforming REST JSON
        results to CSV/TSV, as these clients generally do, projects data structures
        to tables useful for many applications.
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
