vol_rle_centroid — 3D rle_region op

Data kinds: rle_regionposition

Call: import fullseye as fs; fs.ledger.vol_rle_centroid(region, spacing=None) (to call the implementation directly, import volregion; volregion.vol_rle_centroid(region, spacing=None); from the registry, ops3d.get("vol_rle_centroid"))

Usage

Centroid `(z, y, x)` of the region, computed on the runs (no decode).

> The detailed description below is the original text — the summary and the headings are translated.

Each run contributes `n voxels at its row's (z, y)` and mean x

`(start + end - 1) / 2` — the exact arithmetic mean of the member voxel

indices, so it matches the dense centroid to floating-point accuracy.

Pass *spacing* `(sz, sy, sx)` for physical coordinates. An empty region

raises `ValueError`.

返り値: `(z, y, x) の 3 つの float(depth, row, col 順)。spacing` 無しなら

voxel index 単位(index の算術平均そのもの)、`spacing` を渡すと各成分に

`(sz, sy, sx) を掛けた物理座標(mm など、spacing と同じ単位)。spacing` は

長さ 3 の正の有限値、または `spacing_mm 属性を持つ volio.VolumeMeta`。

検証(`ValueError): VolRLE の整合性検査 / run が 0 本 / spacing` が

長さ 3 でない・非正・非有限。

注意: 質量中心ではなく voxel の幾何重心(全 voxel 等重み)。gray 値で重み付けした

重心が欲しい場合は `vol_rle_decode` してから自分で計算する。

References (sample data, literature)

• Sample-data catalog (download URLs / licences) — 2-D uses skimage.data (BSD/public domain) plus synthetic images; 3-D lists download URLs for real data sources (Stanford, PDS, …).

• Operator provenance and references — the sources of the research/methods this op family came from.

Runnable examples (verified samples that actually call this op)

rle_region_efficiencypy -3.11 examples_3d/rle_region_efficiency.py

Ops the type connects to (they accept position as input)

refine_peak_newton · refine_translation_lk · refine_lm · fuse_to_voxel

Same category (rle_region)

vol_rle_encode · vol_rle_decode · vol_rle_volume · vol_rle_bbox · vol_rle_union · vol_rle_intersect · vol_rle_difference · vol_rle_components


*Provenance: volregion.py — 3D operator registry. This per-op note is generated by tools/opdocs.py md (do not hand-edit).*

© 2026 Kazufumi Furuse — Fullseye operator documentation. Licensed under Apache-2.0.